Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence

Rosly HAAM, Mohd Nor SA, Md. Naim D. 2017. Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence. Biodiversitas 18: 1696-1704. This study was centered around the phylogenetic of mud crab genus Scylla collected across Malaysia based on a 542 base pairs (...

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Autores principales:	HURUL ADILA-AIDA MOHAMAD ROSLY, SITI AZIZAH MOHD NOR, DARLINA MD. NAIM
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2017
Materias:	scylla phylogenetics coi mud crab conservation Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/6c764d53eb45499b9543cfe24a4a2d80
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spelling	oai:doaj.org-article:6c764d53eb45499b9543cfe24a4a2d802021-11-16T14:00:12ZPhylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence1412-033X2085-472210.13057/biodiv/d180449https://doaj.org/article/6c764d53eb45499b9543cfe24a4a2d802017-10-01T00:00:00Zhttps://smujo.id/biodiv/article/view/2126https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Rosly HAAM, Mohd Nor SA, Md. Naim D. 2017. Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence. Biodiversitas 18: 1696-1704. This study was centered around the phylogenetic of mud crab genus Scylla collected across Malaysia based on a 542 base pairs (bp) section of the mitochondrial cytochrome c oxidase I (COI) from 201 individuals. Sampling locations were nine areas including one location from Borneo (Sabah and Sarawak). The Maximum Parsimony (MP) and Neighbor-Joining (NJ) methods was conducted for phylogenetic analysis and performed in MEGA ver. 5.05. We found that S. olivacea is the plenteous species collected with 111 individuals, followed by S. tranquebarica with 61 individuals. Scylla paramamosain is barely found throughout our sampling locations with only 29 individuals caught in this study. Regrettably, no wild samples of S. serrata was found during our sampling occasions, accordingly life specimens were purchased from restaurants to complete the analysis. Both MP and NJ phylogenetic trees shows a monophyletic relationships among all four species within genus Scylla included in this study. This was also supported by the genetic distance analysis based on Tamura-Nei which indicates that there is high interspecific and low intraspecific genetic distances among and within species of Scylla included in the analysis. This investigation divulged a solid proof that supports the occurrence of three species of Scylla with the nonappearance of S. serrata in Malaysian waters. This current investigations could serve as a guidance for promoting further assessment on aquaculture and conservation management for the species.HURUL ADILA-AIDA MOHAMAD ROSLYSITI AZIZAH MOHD NORDARLINA MD. NAIMMBI & UNS Soloarticlescyllaphylogeneticscoimud crabconservationBiology (General)QH301-705.5ENBiodiversitas, Vol 18, Iss 4, Pp 1696-1704 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	scylla phylogenetics coi mud crab conservation Biology (General) QH301-705.5
spellingShingle	scylla phylogenetics coi mud crab conservation Biology (General) QH301-705.5 HURUL ADILA-AIDA MOHAMAD ROSLY SITI AZIZAH MOHD NOR DARLINA MD. NAIM Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence
description	Rosly HAAM, Mohd Nor SA, Md. Naim D. 2017. Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence. Biodiversitas 18: 1696-1704. This study was centered around the phylogenetic of mud crab genus Scylla collected across Malaysia based on a 542 base pairs (bp) section of the mitochondrial cytochrome c oxidase I (COI) from 201 individuals. Sampling locations were nine areas including one location from Borneo (Sabah and Sarawak). The Maximum Parsimony (MP) and Neighbor-Joining (NJ) methods was conducted for phylogenetic analysis and performed in MEGA ver. 5.05. We found that S. olivacea is the plenteous species collected with 111 individuals, followed by S. tranquebarica with 61 individuals. Scylla paramamosain is barely found throughout our sampling locations with only 29 individuals caught in this study. Regrettably, no wild samples of S. serrata was found during our sampling occasions, accordingly life specimens were purchased from restaurants to complete the analysis. Both MP and NJ phylogenetic trees shows a monophyletic relationships among all four species within genus Scylla included in this study. This was also supported by the genetic distance analysis based on Tamura-Nei which indicates that there is high interspecific and low intraspecific genetic distances among and within species of Scylla included in the analysis. This investigation divulged a solid proof that supports the occurrence of three species of Scylla with the nonappearance of S. serrata in Malaysian waters. This current investigations could serve as a guidance for promoting further assessment on aquaculture and conservation management for the species.
format	article
author	HURUL ADILA-AIDA MOHAMAD ROSLY SITI AZIZAH MOHD NOR DARLINA MD. NAIM
author_facet	HURUL ADILA-AIDA MOHAMAD ROSLY SITI AZIZAH MOHD NOR DARLINA MD. NAIM
author_sort	HURUL ADILA-AIDA MOHAMAD ROSLY
title	Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence
title_short	Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence
title_full	Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence
title_fullStr	Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence
title_full_unstemmed	Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence
title_sort	phylogenetic relationships within the scylla (portunidae) assessed by the mitochondrial dna sequence
publisher	MBI & UNS Solo
publishDate	2017
url	https://doaj.org/article/6c764d53eb45499b9543cfe24a4a2d80
work_keys_str_mv	AT huruladilaaidamohamadrosly phylogeneticrelationshipswithinthescyllaportunidaeassessedbythemitochondrialdnasequence AT sitiazizahmohdnor phylogeneticrelationshipswithinthescyllaportunidaeassessedbythemitochondrialdnasequence AT darlinamdnaim phylogeneticrelationshipswithinthescyllaportunidaeassessedbythemitochondrialdnasequence
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Phylogenetic relationships within the Scylla (Portunidae) assessed by the mitochondrial DNA sequence

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