Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress

Callose deposition occurs during plant growth and development, as well as when plants are under biotic and abiotic stress. Callose synthase is a key enzyme for the synthesis of callose. In this study, 27, 28, 16, and 15 callose synthase family members were identified in Gossypium hirsutum, Gossypium...

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Autores principales:	Jiajia Feng, Yi Chen, Xianghui Xiao, Yunfang Qu, Pengtao Li, Quanwei Lu, Jinling Huang
Formato:	article
Lenguaje:	EN
Publicado:	PeerJ Inc. 2021
Materias:	Callose synthase Synteny Gene family Gossypium Various stresses Medicine R
Acceso en línea:	https://doaj.org/article/6e26bb1ff9f94232b0038e091ad82e37
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id	oai:doaj.org-article:6e26bb1ff9f94232b0038e091ad82e37
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spelling	oai:doaj.org-article:6e26bb1ff9f94232b0038e091ad82e372021-12-02T15:05:17ZGenome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress10.7717/peerj.125572167-8359https://doaj.org/article/6e26bb1ff9f94232b0038e091ad82e372021-11-01T00:00:00Zhttps://peerj.com/articles/12557.pdfhttps://peerj.com/articles/12557/https://doaj.org/toc/2167-8359Callose deposition occurs during plant growth and development, as well as when plants are under biotic and abiotic stress. Callose synthase is a key enzyme for the synthesis of callose. In this study, 27, 28, 16, and 15 callose synthase family members were identified in Gossypium hirsutum, Gossypium barbadense, Gossypium raimondii, and Gossypium arboreum using the sequence of Arabidopsis callose synthase. The CalSs were divided into five groups by phylogenetic, gene structure, and conservative motif analysis. The conserved motifs and gene structures of CalSs in each group were highly similar. Based on the analysis of cis-acting elements, it is inferred that GhCalSs were regulated by abiotic stress. WGD/Segmental duplication promoted the amplification of the CalS gene in cotton, and purification selection had an important function in the CalS family. The transcriptome data and qRT-PCR under cold, heat, salt, and PEG treatments showed that GhCalSs were involved in abiotic stress. The expression patterns of GhCalSs were different in various tissues. We predicted that GhCalS4, which was highly expressed in fibers, had an important effect on fiber elongation. Hence, these results help us understand the role of GhCalSs in fiber development and stress response.Jiajia FengYi ChenXianghui XiaoYunfang QuPengtao LiQuanwei LuJinling HuangPeerJ Inc.articleCallose synthaseSyntenyGene familyGossypiumVarious stressesMedicineRENPeerJ, Vol 9, p e12557 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Callose synthase Synteny Gene family Gossypium Various stresses Medicine R
spellingShingle	Callose synthase Synteny Gene family Gossypium Various stresses Medicine R Jiajia Feng Yi Chen Xianghui Xiao Yunfang Qu Pengtao Li Quanwei Lu Jinling Huang Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress
description	Callose deposition occurs during plant growth and development, as well as when plants are under biotic and abiotic stress. Callose synthase is a key enzyme for the synthesis of callose. In this study, 27, 28, 16, and 15 callose synthase family members were identified in Gossypium hirsutum, Gossypium barbadense, Gossypium raimondii, and Gossypium arboreum using the sequence of Arabidopsis callose synthase. The CalSs were divided into five groups by phylogenetic, gene structure, and conservative motif analysis. The conserved motifs and gene structures of CalSs in each group were highly similar. Based on the analysis of cis-acting elements, it is inferred that GhCalSs were regulated by abiotic stress. WGD/Segmental duplication promoted the amplification of the CalS gene in cotton, and purification selection had an important function in the CalS family. The transcriptome data and qRT-PCR under cold, heat, salt, and PEG treatments showed that GhCalSs were involved in abiotic stress. The expression patterns of GhCalSs were different in various tissues. We predicted that GhCalS4, which was highly expressed in fibers, had an important effect on fiber elongation. Hence, these results help us understand the role of GhCalSs in fiber development and stress response.
format	article
author	Jiajia Feng Yi Chen Xianghui Xiao Yunfang Qu Pengtao Li Quanwei Lu Jinling Huang
author_facet	Jiajia Feng Yi Chen Xianghui Xiao Yunfang Qu Pengtao Li Quanwei Lu Jinling Huang
author_sort	Jiajia Feng
title	Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress
title_short	Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress
title_full	Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress
title_fullStr	Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress
title_full_unstemmed	Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress
title_sort	genome-wide analysis of the cals gene family in cotton reveals their potential roles in fiber development and responses to stress
publisher	PeerJ Inc.
publishDate	2021
url	https://doaj.org/article/6e26bb1ff9f94232b0038e091ad82e37
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Genome-wide analysis of the CalS gene family in cotton reveals their potential roles in fiber development and responses to stress

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