Hamming-shifting graph of genomic short reads: Efficient construction and its application for compression.

Graphs such as de Bruijn graphs and OLC (overlap-layout-consensus) graphs have been widely adopted for the de novo assembly of genomic short reads. This work studies another important problem in the field: how graphs can be used for high-performance compression of the large-scale sequencing data. We...

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Autores principales: Yuansheng Liu, Jinyan Li
Formato: article
Lenguaje:EN
Publicado: Public Library of Science (PLoS) 2021
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Acceso en línea:https://doaj.org/article/762452c087c740ccbd501d129ae00806
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