Metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms

Leaf samples were obtained from Vitis vinifera ‘Malvasia Fina’ plants with well-characterized esca complex disease symptoms (n = 18) and from healthy uninfected plants (n = 6). Leaves from diseased plants were divided into three groups: asymptomatic (ASY), chlorotic (SY1), and scorched leaves (SY2)....

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Autores principales:	Piebiep Goufo, Isabel Cortez
Formato:	article
Lenguaje:	EN
Publicado:	Elsevier 2021
Materias:	Grapevine trunk diseases Metabolomics Fomitiporia mediterranea Metabolic profiling Esca complex disease Phaeomoniella chlamydospora Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390
Acceso en línea:	https://doaj.org/article/77984268faea4e899d74317bec19b107
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spelling	oai:doaj.org-article:77984268faea4e899d74317bec19b1072021-11-24T04:31:55ZMetabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms2352-340910.1016/j.dib.2021.107623https://doaj.org/article/77984268faea4e899d74317bec19b1072021-12-01T00:00:00Zhttp://www.sciencedirect.com/science/article/pii/S2352340921008982https://doaj.org/toc/2352-3409Leaf samples were obtained from Vitis vinifera ‘Malvasia Fina’ plants with well-characterized esca complex disease symptoms (n = 18) and from healthy uninfected plants (n = 6). Leaves from diseased plants were divided into three groups: asymptomatic (ASY), chlorotic (SY1), and scorched leaves (SY2). The metabolic profile of these leaves was then examined using an ultrahigh performance liquid chromatography system coupled to a Q-Exactive Hybrid Quadrupole-Orbitrap high resolution/accurate mass spectrometer interfaced with a heated electrospray ionization source. The number of small molecules measured in a sample was increased by varying the reconstitution solvent, chromatographic column, and ionization source. Data on accurate masses, peak areas, and relative levels of several metabolites were documented for each leaf sample, using the abovementioned approach. In this paper, data on 235 metabolites of known structural identity are reported, along with the biochemical pathways to which the metabolites belong. The remaining data related to lipid species and with a different focus of the research question are reported elsewhere. The broad coverage of metabolites reported here resulted in a greater coverage of the biochemical pathways involved in grapevine metabolism, which could provide a better understanding of the biochemical changes occurring during the onset and progression of foliar symptoms after invasion of woods by esca-associated pathogens. To determine which metabolites varied according to the study design, the detected ion features were processed using different statistical methods, including mean and median values, fold changes, Welch's two-sample t-test, false discovery rate, and quartiles represented by box and whisker plots. The goal of this statistical evaluation was to assess the responses of healthy, asymptomatic, and symptomatic leaf groups using a pairwise comparison, thus providing an opportunity for detecting statistically significant compounds and uncovering the dynamic metabolic models underlying disease latency and symptom expression.Piebiep GoufoIsabel CortezElsevierarticleGrapevine trunk diseasesMetabolomicsFomitiporia mediterraneaMetabolic profilingEsca complex diseasePhaeomoniella chlamydosporaComputer applications to medicine. Medical informaticsR858-859.7Science (General)Q1-390ENData in Brief, Vol 39, Iss , Pp 107623- (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Grapevine trunk diseases Metabolomics Fomitiporia mediterranea Metabolic profiling Esca complex disease Phaeomoniella chlamydospora Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390
spellingShingle	Grapevine trunk diseases Metabolomics Fomitiporia mediterranea Metabolic profiling Esca complex disease Phaeomoniella chlamydospora Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 Piebiep Goufo Isabel Cortez Metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms
description	Leaf samples were obtained from Vitis vinifera ‘Malvasia Fina’ plants with well-characterized esca complex disease symptoms (n = 18) and from healthy uninfected plants (n = 6). Leaves from diseased plants were divided into three groups: asymptomatic (ASY), chlorotic (SY1), and scorched leaves (SY2). The metabolic profile of these leaves was then examined using an ultrahigh performance liquid chromatography system coupled to a Q-Exactive Hybrid Quadrupole-Orbitrap high resolution/accurate mass spectrometer interfaced with a heated electrospray ionization source. The number of small molecules measured in a sample was increased by varying the reconstitution solvent, chromatographic column, and ionization source. Data on accurate masses, peak areas, and relative levels of several metabolites were documented for each leaf sample, using the abovementioned approach. In this paper, data on 235 metabolites of known structural identity are reported, along with the biochemical pathways to which the metabolites belong. The remaining data related to lipid species and with a different focus of the research question are reported elsewhere. The broad coverage of metabolites reported here resulted in a greater coverage of the biochemical pathways involved in grapevine metabolism, which could provide a better understanding of the biochemical changes occurring during the onset and progression of foliar symptoms after invasion of woods by esca-associated pathogens. To determine which metabolites varied according to the study design, the detected ion features were processed using different statistical methods, including mean and median values, fold changes, Welch's two-sample t-test, false discovery rate, and quartiles represented by box and whisker plots. The goal of this statistical evaluation was to assess the responses of healthy, asymptomatic, and symptomatic leaf groups using a pairwise comparison, thus providing an opportunity for detecting statistically significant compounds and uncovering the dynamic metabolic models underlying disease latency and symptom expression.
format	article
author	Piebiep Goufo Isabel Cortez
author_facet	Piebiep Goufo Isabel Cortez
author_sort	Piebiep Goufo
title	Metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms
title_short	Metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms
title_full	Metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms
title_fullStr	Metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms
title_full_unstemmed	Metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms
title_sort	metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms
publisher	Elsevier
publishDate	2021
url	https://doaj.org/article/77984268faea4e899d74317bec19b107
work_keys_str_mv	AT piebiepgoufo metaboliteprofiledataofgrapevineplantswithbrownwoodstreakingandgrapevineleafstripeescacomplexdiseasesymptoms AT isabelcortez metaboliteprofiledataofgrapevineplantswithbrownwoodstreakingandgrapevineleafstripeescacomplexdiseasesymptoms
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Metabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms

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