Non-invasive single-cell morphometry in living bacterial biofilms

Accurate cell detection in dense bacterial biofilms is challenging. Here, the authors report an image analysis pipeline that is able to accurately segment and classify single bacterial cells in 3D fluorescence images: Bacterial Cell Morphometry 3D (BCM3D).

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Autores principales:	Mingxing Zhang, Ji Zhang, Yibo Wang, Jie Wang, Alecia M. Achimovich, Scott T. Acton, Andreas Gahlmann
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2020
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/7a9bc6ded39a44f8ba843f3cc5a84278
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spelling	oai:doaj.org-article:7a9bc6ded39a44f8ba843f3cc5a842782021-12-02T15:39:07ZNon-invasive single-cell morphometry in living bacterial biofilms10.1038/s41467-020-19866-82041-1723https://doaj.org/article/7a9bc6ded39a44f8ba843f3cc5a842782020-12-01T00:00:00Zhttps://doi.org/10.1038/s41467-020-19866-8https://doaj.org/toc/2041-1723Accurate cell detection in dense bacterial biofilms is challenging. Here, the authors report an image analysis pipeline that is able to accurately segment and classify single bacterial cells in 3D fluorescence images: Bacterial Cell Morphometry 3D (BCM3D).Mingxing ZhangJi ZhangYibo WangJie WangAlecia M. AchimovichScott T. ActonAndreas GahlmannNature PortfolioarticleScienceQENNature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Mingxing Zhang Ji Zhang Yibo Wang Jie Wang Alecia M. Achimovich Scott T. Acton Andreas Gahlmann Non-invasive single-cell morphometry in living bacterial biofilms
description	Accurate cell detection in dense bacterial biofilms is challenging. Here, the authors report an image analysis pipeline that is able to accurately segment and classify single bacterial cells in 3D fluorescence images: Bacterial Cell Morphometry 3D (BCM3D).
format	article
author	Mingxing Zhang Ji Zhang Yibo Wang Jie Wang Alecia M. Achimovich Scott T. Acton Andreas Gahlmann
author_facet	Mingxing Zhang Ji Zhang Yibo Wang Jie Wang Alecia M. Achimovich Scott T. Acton Andreas Gahlmann
author_sort	Mingxing Zhang
title	Non-invasive single-cell morphometry in living bacterial biofilms
title_short	Non-invasive single-cell morphometry in living bacterial biofilms
title_full	Non-invasive single-cell morphometry in living bacterial biofilms
title_fullStr	Non-invasive single-cell morphometry in living bacterial biofilms
title_full_unstemmed	Non-invasive single-cell morphometry in living bacterial biofilms
title_sort	non-invasive single-cell morphometry in living bacterial biofilms
publisher	Nature Portfolio
publishDate	2020
url	https://doaj.org/article/7a9bc6ded39a44f8ba843f3cc5a84278
work_keys_str_mv	AT mingxingzhang noninvasivesinglecellmorphometryinlivingbacterialbiofilms AT jizhang noninvasivesinglecellmorphometryinlivingbacterialbiofilms AT yibowang noninvasivesinglecellmorphometryinlivingbacterialbiofilms AT jiewang noninvasivesinglecellmorphometryinlivingbacterialbiofilms AT aleciamachimovich noninvasivesinglecellmorphometryinlivingbacterialbiofilms AT scotttacton noninvasivesinglecellmorphometryinlivingbacterialbiofilms AT andreasgahlmann noninvasivesinglecellmorphometryinlivingbacterialbiofilms
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Non-invasive single-cell morphometry in living bacterial biofilms

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