A global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]

Despite considerable global surveillance of antimicrobial resistance (AMR), data on the global emergence of new resistance genotypes in bacteria has not been systematically compiled. We conducted a study of English-language scientific literature (2006-2017) and ProMED-mail disease surveillance repor...

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Autores principales:	Emma Mendelsohn, Noam Ross, Allison M. White, Karissa Whiting, Cale Basaraba, Brooke Watson Madubuonwu, Erica Johnson, Mushtaq Dualeh, Zach Matson, Sonia Dattaray, Nchedochukwu Ezeokoli, Melanie Kirshenbaum Lieberman, Jacob Kotcher, Samantha Maher, Carlos Zambrana-Torrelio, Peter Daszak
Formato:	article
Lenguaje:	EN
Publicado:	F1000 Research Ltd 2021
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/7f4c3ff909c9422cbd06ea3491475b4f
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spelling	oai:doaj.org-article:7f4c3ff909c9422cbd06ea3491475b4f2021-11-22T12:41:06ZA global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]2046-140210.12688/f1000research.26870.2https://doaj.org/article/7f4c3ff909c9422cbd06ea3491475b4f2021-06-01T00:00:00Zhttps://f1000research.com/articles/9-1320/v2https://doaj.org/toc/2046-1402Despite considerable global surveillance of antimicrobial resistance (AMR), data on the global emergence of new resistance genotypes in bacteria has not been systematically compiled. We conducted a study of English-language scientific literature (2006-2017) and ProMED-mail disease surveillance reports (1994-2017) to identify global events of novel AMR emergence (first clinical reports of unique drug-bacteria resistance combinations). We screened 24,966 abstracts and reports, ultimately identifying 1,757 novel AMR emergence events from 268 peer-reviewed studies and 26 disease surveillance reports (294 total). Events were reported in 66 countries, with most events in the United States (152), China (128), and India (127). The most common bacteria demonstrating new resistance were Klebsiella pneumoniae (344) and Escherichia coli (218). Resistance was most common against antibiotic drugs imipenem (89 events), ciprofloxacin (84) and ceftazidime (83). We provide an open-access database of emergence events with standardized fields for bacterial species, drugs, location, and date. We discuss the impact of reporting and surveillance bias on database coverage, and we suggest guidelines for data analysis. This database may be broadly useful for understanding rates and patterns of AMR evolution, identifying global drivers and correlates, and targeting surveillance and interventions.Emma MendelsohnNoam RossAllison M. WhiteKarissa WhitingCale BasarabaBrooke Watson MadubuonwuErica JohnsonMushtaq DualehZach MatsonSonia DattarayNchedochukwu EzeokoliMelanie Kirshenbaum LiebermanJacob KotcherSamantha MaherCarlos Zambrana-TorrelioPeter DaszakF1000 Research LtdarticleMedicineRScienceQENF1000Research, Vol 9 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Emma Mendelsohn Noam Ross Allison M. White Karissa Whiting Cale Basaraba Brooke Watson Madubuonwu Erica Johnson Mushtaq Dualeh Zach Matson Sonia Dattaray Nchedochukwu Ezeokoli Melanie Kirshenbaum Lieberman Jacob Kotcher Samantha Maher Carlos Zambrana-Torrelio Peter Daszak A global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]
description	Despite considerable global surveillance of antimicrobial resistance (AMR), data on the global emergence of new resistance genotypes in bacteria has not been systematically compiled. We conducted a study of English-language scientific literature (2006-2017) and ProMED-mail disease surveillance reports (1994-2017) to identify global events of novel AMR emergence (first clinical reports of unique drug-bacteria resistance combinations). We screened 24,966 abstracts and reports, ultimately identifying 1,757 novel AMR emergence events from 268 peer-reviewed studies and 26 disease surveillance reports (294 total). Events were reported in 66 countries, with most events in the United States (152), China (128), and India (127). The most common bacteria demonstrating new resistance were Klebsiella pneumoniae (344) and Escherichia coli (218). Resistance was most common against antibiotic drugs imipenem (89 events), ciprofloxacin (84) and ceftazidime (83). We provide an open-access database of emergence events with standardized fields for bacterial species, drugs, location, and date. We discuss the impact of reporting and surveillance bias on database coverage, and we suggest guidelines for data analysis. This database may be broadly useful for understanding rates and patterns of AMR evolution, identifying global drivers and correlates, and targeting surveillance and interventions.
format	article
author	Emma Mendelsohn Noam Ross Allison M. White Karissa Whiting Cale Basaraba Brooke Watson Madubuonwu Erica Johnson Mushtaq Dualeh Zach Matson Sonia Dattaray Nchedochukwu Ezeokoli Melanie Kirshenbaum Lieberman Jacob Kotcher Samantha Maher Carlos Zambrana-Torrelio Peter Daszak
author_facet	Emma Mendelsohn Noam Ross Allison M. White Karissa Whiting Cale Basaraba Brooke Watson Madubuonwu Erica Johnson Mushtaq Dualeh Zach Matson Sonia Dattaray Nchedochukwu Ezeokoli Melanie Kirshenbaum Lieberman Jacob Kotcher Samantha Maher Carlos Zambrana-Torrelio Peter Daszak
author_sort	Emma Mendelsohn
title	A global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]
title_short	A global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]
title_full	A global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]
title_fullStr	A global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]
title_full_unstemmed	A global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]
title_sort	global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]
publisher	F1000 Research Ltd
publishDate	2021
url	https://doaj.org/article/7f4c3ff909c9422cbd06ea3491475b4f
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A global repository of novel antimicrobial emergence events [version 2; peer review: 1 approved, 2 approved with reservations]

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