Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem

Abstract Data-driven approaches were applied to investigate the temporal and spatial changes of 1,022 individuals of wild yellowfin goby and its potential interaction with the estuarine environment in Japan. Nuclear magnetic resonance (NMR)-based metabolomics revealed that growth stage is a primary...

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Autores principales:	Feifei Wei, Kenji Sakata, Taiga Asakura, Yasuhiro Date, Jun Kikuchi
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2018
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/8223c758649c4490b6c74b3b9c1d922b
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spelling	oai:doaj.org-article:8223c758649c4490b6c74b3b9c1d922b2021-12-02T16:08:03ZSystemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem10.1038/s41598-018-20120-x2045-2322https://doaj.org/article/8223c758649c4490b6c74b3b9c1d922b2018-02-01T00:00:00Zhttps://doi.org/10.1038/s41598-018-20120-xhttps://doaj.org/toc/2045-2322Abstract Data-driven approaches were applied to investigate the temporal and spatial changes of 1,022 individuals of wild yellowfin goby and its potential interaction with the estuarine environment in Japan. Nuclear magnetic resonance (NMR)-based metabolomics revealed that growth stage is a primary factor affecting muscle metabolism. Then, the metabolic, elemental and microbial profiles of the pooled samples generated according to either the same habitat or sampling season as well as the river water and sediment samples from their habitats were measured using NMR spectra, inductively coupled plasma optical emission spectrometry and next-generation 16 S rRNA gene sequencing. Hidden interactions in the integrated datasets such as the potential role of intestinal bacteria in the control of spawning migration, essential amino acids and fatty acids synthesis in wild yellowfin goby were further extracted using correlation clustering and market basket analysis-generated networks. Importantly, our systematic analysis of both the seasonal and latitudinal variations in metabolome, ionome and microbiome of wild yellowfin goby pointed out that the environmental factors such as the temperature play important roles in regulating the body homeostasis of wild fish.Feifei WeiKenji SakataTaiga AsakuraYasuhiro DateJun KikuchiNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 8, Iss 1, Pp 1-12 (2018)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Feifei Wei Kenji Sakata Taiga Asakura Yasuhiro Date Jun Kikuchi Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem
description	Abstract Data-driven approaches were applied to investigate the temporal and spatial changes of 1,022 individuals of wild yellowfin goby and its potential interaction with the estuarine environment in Japan. Nuclear magnetic resonance (NMR)-based metabolomics revealed that growth stage is a primary factor affecting muscle metabolism. Then, the metabolic, elemental and microbial profiles of the pooled samples generated according to either the same habitat or sampling season as well as the river water and sediment samples from their habitats were measured using NMR spectra, inductively coupled plasma optical emission spectrometry and next-generation 16 S rRNA gene sequencing. Hidden interactions in the integrated datasets such as the potential role of intestinal bacteria in the control of spawning migration, essential amino acids and fatty acids synthesis in wild yellowfin goby were further extracted using correlation clustering and market basket analysis-generated networks. Importantly, our systematic analysis of both the seasonal and latitudinal variations in metabolome, ionome and microbiome of wild yellowfin goby pointed out that the environmental factors such as the temperature play important roles in regulating the body homeostasis of wild fish.
format	article
author	Feifei Wei Kenji Sakata Taiga Asakura Yasuhiro Date Jun Kikuchi
author_facet	Feifei Wei Kenji Sakata Taiga Asakura Yasuhiro Date Jun Kikuchi
author_sort	Feifei Wei
title	Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem
title_short	Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem
title_full	Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem
title_fullStr	Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem
title_full_unstemmed	Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem
title_sort	systemic homeostasis in metabolome, ionome, and microbiome of wild yellowfin goby in estuarine ecosystem
publisher	Nature Portfolio
publishDate	2018
url	https://doaj.org/article/8223c758649c4490b6c74b3b9c1d922b
work_keys_str_mv	AT feifeiwei systemichomeostasisinmetabolomeionomeandmicrobiomeofwildyellowfingobyinestuarineecosystem AT kenjisakata systemichomeostasisinmetabolomeionomeandmicrobiomeofwildyellowfingobyinestuarineecosystem AT taigaasakura systemichomeostasisinmetabolomeionomeandmicrobiomeofwildyellowfingobyinestuarineecosystem AT yasuhirodate systemichomeostasisinmetabolomeionomeandmicrobiomeofwildyellowfingobyinestuarineecosystem AT junkikuchi systemichomeostasisinmetabolomeionomeandmicrobiomeofwildyellowfingobyinestuarineecosystem
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Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem

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