Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption

Abstract Pterospermum kingtungense C.Y.Wu ex Hsue is a typical tree species living in the relatively adverse limestone habitat. Due to its excellent wood quality and big size, it is an important timber resource which caused its endangered. We firstly provide the data resources by reporting an annota...

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Autores principales:	Yandong Ren, Yanan Zhu, Qi Wang, Hui Xiang, Boyi Wang
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2017
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/87a20a4d390440f28cbe4f1e155c7beb
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spelling	oai:doaj.org-article:87a20a4d390440f28cbe4f1e155c7beb2021-12-02T15:05:11ZTranscriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption10.1038/s41598-017-03433-12045-2322https://doaj.org/article/87a20a4d390440f28cbe4f1e155c7beb2017-06-01T00:00:00Zhttps://doi.org/10.1038/s41598-017-03433-1https://doaj.org/toc/2045-2322Abstract Pterospermum kingtungense C.Y.Wu ex Hsue is a typical tree species living in the relatively adverse limestone habitat. Due to its excellent wood quality and big size, it is an important timber resource which caused its endangered. We firstly provide the data resources by reporting an annotated transcriptome assembly. 203 million unique Illumina RNA-seq reads were produced with totally 50,333 transcripts, among which 48,778 transcripts were annotated. By a global comparison of homology between P. kingtungense and cacao, we identified 9,507 single copy orthologues and 990 P. kingtungense specific genes. GO enrichment analyses indicate that P. kingtungense specific genes are enriched in defense response, implying potential adaptation to limestone environment. As to cell compartment, the genes are enriched in thylakoid component. Consistently, KEGG enrichment indicates that genes are enriched in photosynthesis. In addition, we identified two genes under positive selection in P. kingtungense species. These results suggest that P. kingtungense have strong photosynthetic capacity, which related to vegetation growth. Our work provides the genomic resources of a limestone specific tree with economic importance to local society and suggests possible mechanism on its characteristics on the limestone adaption and excellent wood properties, which will be important for its conservation and sustainable utilization.Yandong RenYanan ZhuQi WangHui XiangBoyi WangNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 7, Iss 1, Pp 1-8 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Yandong Ren Yanan Zhu Qi Wang Hui Xiang Boyi Wang Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
description	Abstract Pterospermum kingtungense C.Y.Wu ex Hsue is a typical tree species living in the relatively adverse limestone habitat. Due to its excellent wood quality and big size, it is an important timber resource which caused its endangered. We firstly provide the data resources by reporting an annotated transcriptome assembly. 203 million unique Illumina RNA-seq reads were produced with totally 50,333 transcripts, among which 48,778 transcripts were annotated. By a global comparison of homology between P. kingtungense and cacao, we identified 9,507 single copy orthologues and 990 P. kingtungense specific genes. GO enrichment analyses indicate that P. kingtungense specific genes are enriched in defense response, implying potential adaptation to limestone environment. As to cell compartment, the genes are enriched in thylakoid component. Consistently, KEGG enrichment indicates that genes are enriched in photosynthesis. In addition, we identified two genes under positive selection in P. kingtungense species. These results suggest that P. kingtungense have strong photosynthetic capacity, which related to vegetation growth. Our work provides the genomic resources of a limestone specific tree with economic importance to local society and suggests possible mechanism on its characteristics on the limestone adaption and excellent wood properties, which will be important for its conservation and sustainable utilization.
format	article
author	Yandong Ren Yanan Zhu Qi Wang Hui Xiang Boyi Wang
author_facet	Yandong Ren Yanan Zhu Qi Wang Hui Xiang Boyi Wang
author_sort	Yandong Ren
title	Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
title_short	Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
title_full	Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
title_fullStr	Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
title_full_unstemmed	Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
title_sort	transcriptome of pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
publisher	Nature Portfolio
publishDate	2017
url	https://doaj.org/article/87a20a4d390440f28cbe4f1e155c7beb
work_keys_str_mv	AT yandongren transcriptomeofpterospermumkingtungenseprovidesimplicationsonthemechanismunderlyingitsrapidvegetativegrowthandlimestoneadaption AT yananzhu transcriptomeofpterospermumkingtungenseprovidesimplicationsonthemechanismunderlyingitsrapidvegetativegrowthandlimestoneadaption AT qiwang transcriptomeofpterospermumkingtungenseprovidesimplicationsonthemechanismunderlyingitsrapidvegetativegrowthandlimestoneadaption AT huixiang transcriptomeofpterospermumkingtungenseprovidesimplicationsonthemechanismunderlyingitsrapidvegetativegrowthandlimestoneadaption AT boyiwang transcriptomeofpterospermumkingtungenseprovidesimplicationsonthemechanismunderlyingitsrapidvegetativegrowthandlimestoneadaption
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Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption

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