A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage
Quantitative analysis of embryonic cell dynamics from large data sets remains a major challenge in the field of developmental biology. Here the authors develop software and a workflow to reconstruct cell lineage trees from 3D time lapse imaging data sets from several developing organisms including z...
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Nature Portfolio
2016
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oai:doaj.org-article:8806e413a23947af8650a0bb9603ea152021-12-02T17:32:38ZA workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage10.1038/ncomms96742041-1723https://doaj.org/article/8806e413a23947af8650a0bb9603ea152016-02-01T00:00:00Zhttps://doi.org/10.1038/ncomms9674https://doaj.org/toc/2041-1723Quantitative analysis of embryonic cell dynamics from large data sets remains a major challenge in the field of developmental biology. Here the authors develop software and a workflow to reconstruct cell lineage trees from 3D time lapse imaging data sets from several developing organisms including zebrafish, tunicates and sea urchins.Emmanuel FaureThierry SavyBarbara RizziCamilo MelaniOlga StašováDimitri FabrègesRóbert ŠpirMark HammonsRóbert ČúnderlíkGaëlle RecherBenoît LombardotLouise DuloquinIngrid ColinJozef KollárSophie DesnoulezPierre AffaticatiBenoît MauryAdeline BoyreauJean-Yves NiefPascal CalvatPhilippe VernierMonique FrainGeorges LutfallaYannick KergosienPierre SuretMariana RemešíkováRené DoursatAlessandro SartiKarol MikulaNadine PeyriérasPaul BourgineNature PortfolioarticleScienceQENNature Communications, Vol 7, Iss 1, Pp 1-10 (2016) |
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Science Q Emmanuel Faure Thierry Savy Barbara Rizzi Camilo Melani Olga Stašová Dimitri Fabrèges Róbert Špir Mark Hammons Róbert Čúnderlík Gaëlle Recher Benoît Lombardot Louise Duloquin Ingrid Colin Jozef Kollár Sophie Desnoulez Pierre Affaticati Benoît Maury Adeline Boyreau Jean-Yves Nief Pascal Calvat Philippe Vernier Monique Frain Georges Lutfalla Yannick Kergosien Pierre Suret Mariana Remešíková René Doursat Alessandro Sarti Karol Mikula Nadine Peyriéras Paul Bourgine A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage |
| description |
Quantitative analysis of embryonic cell dynamics from large data sets remains a major challenge in the field of developmental biology. Here the authors develop software and a workflow to reconstruct cell lineage trees from 3D time lapse imaging data sets from several developing organisms including zebrafish, tunicates and sea urchins. |
| format |
article |
| author |
Emmanuel Faure Thierry Savy Barbara Rizzi Camilo Melani Olga Stašová Dimitri Fabrèges Róbert Špir Mark Hammons Róbert Čúnderlík Gaëlle Recher Benoît Lombardot Louise Duloquin Ingrid Colin Jozef Kollár Sophie Desnoulez Pierre Affaticati Benoît Maury Adeline Boyreau Jean-Yves Nief Pascal Calvat Philippe Vernier Monique Frain Georges Lutfalla Yannick Kergosien Pierre Suret Mariana Remešíková René Doursat Alessandro Sarti Karol Mikula Nadine Peyriéras Paul Bourgine |
| author_facet |
Emmanuel Faure Thierry Savy Barbara Rizzi Camilo Melani Olga Stašová Dimitri Fabrèges Róbert Špir Mark Hammons Róbert Čúnderlík Gaëlle Recher Benoît Lombardot Louise Duloquin Ingrid Colin Jozef Kollár Sophie Desnoulez Pierre Affaticati Benoît Maury Adeline Boyreau Jean-Yves Nief Pascal Calvat Philippe Vernier Monique Frain Georges Lutfalla Yannick Kergosien Pierre Suret Mariana Remešíková René Doursat Alessandro Sarti Karol Mikula Nadine Peyriéras Paul Bourgine |
| author_sort |
Emmanuel Faure |
| title |
A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage |
| title_short |
A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage |
| title_full |
A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage |
| title_fullStr |
A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage |
| title_full_unstemmed |
A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage |
| title_sort |
workflow to process 3d+time microscopy images of developing organisms and reconstruct their cell lineage |
| publisher |
Nature Portfolio |
| publishDate |
2016 |
| url |
https://doaj.org/article/8806e413a23947af8650a0bb9603ea15 |
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