Genomewide SNP marker identification associated with drought tolerance in oil palm

Abstract. Yono D, Nugroho YA, Tanjung ZA, Utomo C, Liwang T. 2021. Genomewide SNP marker identification associated with drought tolerance in oil palm. Biodiversitas 22: 3138-3144. Drought stress is one of the abiotic stresses that frequently occurred in the oil palm plantation and has a negative imp...

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Autores principales:	Dwi Yono, Yogo Adhi Nugroho, Zulfikar Achmad Tanjung, Condro Utomo, Tony Liwang
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2021
Materias:	bulked segregant analysis, ddrad, drought stress, ffb production, snp. Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/88ad2d456d8b4388bc9312294256c261
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spelling	oai:doaj.org-article:88ad2d456d8b4388bc9312294256c2612021-11-22T12:14:18ZGenomewide SNP marker identification associated with drought tolerance in oil palm1412-033X2085-472210.13057/biodiv/d220616https://doaj.org/article/88ad2d456d8b4388bc9312294256c2612021-05-01T00:00:00Zhttps://smujo.id/biodiv/article/view/8422https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Yono D, Nugroho YA, Tanjung ZA, Utomo C, Liwang T. 2021. Genomewide SNP marker identification associated with drought tolerance in oil palm. Biodiversitas 22: 3138-3144. Drought stress is one of the abiotic stresses that frequently occurred in the oil palm plantation and has a negative impact on fresh fruit bunch (FFB) production. Therefore, drought-tolerant palms are essential to be selected to mitigate this challenge. In Indonesia, several oil palm plantation areas have a dry climate, such as Lampung province. Distinct yield performance palms were identified from well-recorded agronomic trials in these areas, where the palms are frequently exposed to drought stresses every year and lead them to suffer from water deficit response. Group of high and low-yielding palms was selected based on FFB production of each palm for at least ten constitutive years. The double digest restriction amplified DNA (ddRAD) genotyping methods were used to capture the Single Nucleotide Polymorph (SNP) variant from pools of sample association datasets. At least, 538k SNPs were identified from these pooled datasets. A bulked segregant analysis with a Case-Control approach was implemented to screen the contrast SNP profiles between both pools. A total of 56 association signals was selected from sequential filtering. These SNP sites are located in 21 genes. Further SNP validation and phenotypic verification are necessary to obtain SNPs marker for drought-tolerant palm selections.Dwi YonoYogo Adhi NugrohoZulfikar Achmad TanjungCondro UtomoTony LiwangMBI & UNS Soloarticlebulked segregant analysis, ddrad, drought stress, ffb production, snp.Biology (General)QH301-705.5ENBiodiversitas, Vol 22, Iss 6 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	bulked segregant analysis, ddrad, drought stress, ffb production, snp. Biology (General) QH301-705.5
spellingShingle	bulked segregant analysis, ddrad, drought stress, ffb production, snp. Biology (General) QH301-705.5 Dwi Yono Yogo Adhi Nugroho Zulfikar Achmad Tanjung Condro Utomo Tony Liwang Genomewide SNP marker identification associated with drought tolerance in oil palm
description	Abstract. Yono D, Nugroho YA, Tanjung ZA, Utomo C, Liwang T. 2021. Genomewide SNP marker identification associated with drought tolerance in oil palm. Biodiversitas 22: 3138-3144. Drought stress is one of the abiotic stresses that frequently occurred in the oil palm plantation and has a negative impact on fresh fruit bunch (FFB) production. Therefore, drought-tolerant palms are essential to be selected to mitigate this challenge. In Indonesia, several oil palm plantation areas have a dry climate, such as Lampung province. Distinct yield performance palms were identified from well-recorded agronomic trials in these areas, where the palms are frequently exposed to drought stresses every year and lead them to suffer from water deficit response. Group of high and low-yielding palms was selected based on FFB production of each palm for at least ten constitutive years. The double digest restriction amplified DNA (ddRAD) genotyping methods were used to capture the Single Nucleotide Polymorph (SNP) variant from pools of sample association datasets. At least, 538k SNPs were identified from these pooled datasets. A bulked segregant analysis with a Case-Control approach was implemented to screen the contrast SNP profiles between both pools. A total of 56 association signals was selected from sequential filtering. These SNP sites are located in 21 genes. Further SNP validation and phenotypic verification are necessary to obtain SNPs marker for drought-tolerant palm selections.
format	article
author	Dwi Yono Yogo Adhi Nugroho Zulfikar Achmad Tanjung Condro Utomo Tony Liwang
author_facet	Dwi Yono Yogo Adhi Nugroho Zulfikar Achmad Tanjung Condro Utomo Tony Liwang
author_sort	Dwi Yono
title	Genomewide SNP marker identification associated with drought tolerance in oil palm
title_short	Genomewide SNP marker identification associated with drought tolerance in oil palm
title_full	Genomewide SNP marker identification associated with drought tolerance in oil palm
title_fullStr	Genomewide SNP marker identification associated with drought tolerance in oil palm
title_full_unstemmed	Genomewide SNP marker identification associated with drought tolerance in oil palm
title_sort	genomewide snp marker identification associated with drought tolerance in oil palm
publisher	MBI & UNS Solo
publishDate	2021
url	https://doaj.org/article/88ad2d456d8b4388bc9312294256c261
work_keys_str_mv	AT dwiyono genomewidesnpmarkeridentificationassociatedwithdroughttoleranceinoilpalm AT yogoadhinugroho genomewidesnpmarkeridentificationassociatedwithdroughttoleranceinoilpalm AT zulfikarachmadtanjung genomewidesnpmarkeridentificationassociatedwithdroughttoleranceinoilpalm AT condroutomo genomewidesnpmarkeridentificationassociatedwithdroughttoleranceinoilpalm AT tonyliwang genomewidesnpmarkeridentificationassociatedwithdroughttoleranceinoilpalm
_version_	1718417688138612736

Genomewide SNP marker identification associated with drought tolerance in oil palm

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