Epigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas

Sharks serve as key predators in coastal areas, with several species using near shore habitats as nursery refuges. With many shark species threatened or endangered, it is now critical to increase the knowledge of how anthropogenic activities impact these populations. This study is the first attempt...

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Autores principales: Andria Paige Beal, Serena Hackerott, Bryan Franks, Samuel H Gruber, Kevin Feldheim, Jose M Eirin-Lopez
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Lenguaje:EN
Publicado: Elsevier 2021
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Acceso en línea:https://doaj.org/article/89a78afca31542708592a3f54ffe1ef7
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spelling oai:doaj.org-article:89a78afca31542708592a3f54ffe1ef72021-12-01T04:53:44ZEpigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas1470-160X10.1016/j.ecolind.2021.107793https://doaj.org/article/89a78afca31542708592a3f54ffe1ef72021-08-01T00:00:00Zhttp://www.sciencedirect.com/science/article/pii/S1470160X21004581https://doaj.org/toc/1470-160XSharks serve as key predators in coastal areas, with several species using near shore habitats as nursery refuges. With many shark species threatened or endangered, it is now critical to increase the knowledge of how anthropogenic activities impact these populations. This study is the first attempt at characterizing epigenetic modifications in elasmobranchs, and their potential as biomarkers of stress and disease using a dredging event episode in the early 2000′s in Bimini, Bahamas, as a model system. Lemon shark fin samples were selected from a historic archive (1995–2012) of Bimini’s North (impacted) and South (control) shark nurseries, and classified as before (1995–2000), during (2001–2006), and after (2007–2012) the dredging event. Genome-wide DNA methylation was analyzed in these samples, along with the quantification of trace metals to investigate temporal and spatial patterns of metal concentrations. The obtained results revealed differential DNA methylation patterns in sharks from the North nursery (closest to the dredging site). While low concentrations of metals were found for all nursery sites and time frames, one trace metal (Manganese) was significantly correlated with the observed differences in DNA methylation. Overall, the findings of this study support DNA methylation as a potential stress biomarker for sharks, even in the absence of a reference genome. Furthermore, the identification of genomic regions differentially methylated in response to stress provides a basis for future analyses aimed at identifying gene networks and subsequent physiological responses to these events. Collectively, these analyses will help improve shark population monitoring, management, and conservation in impacted areas.Andria Paige BealSerena HackerottBryan FranksSamuel H GruberKevin FeldheimJose M Eirin-LopezElsevierarticleEcologyQH540-549.5ENEcological Indicators, Vol 127, Iss , Pp 107793- (2021)
institution DOAJ
collection DOAJ
language EN
topic Ecology
QH540-549.5
spellingShingle Ecology
QH540-549.5
Andria Paige Beal
Serena Hackerott
Bryan Franks
Samuel H Gruber
Kevin Feldheim
Jose M Eirin-Lopez
Epigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas
description Sharks serve as key predators in coastal areas, with several species using near shore habitats as nursery refuges. With many shark species threatened or endangered, it is now critical to increase the knowledge of how anthropogenic activities impact these populations. This study is the first attempt at characterizing epigenetic modifications in elasmobranchs, and their potential as biomarkers of stress and disease using a dredging event episode in the early 2000′s in Bimini, Bahamas, as a model system. Lemon shark fin samples were selected from a historic archive (1995–2012) of Bimini’s North (impacted) and South (control) shark nurseries, and classified as before (1995–2000), during (2001–2006), and after (2007–2012) the dredging event. Genome-wide DNA methylation was analyzed in these samples, along with the quantification of trace metals to investigate temporal and spatial patterns of metal concentrations. The obtained results revealed differential DNA methylation patterns in sharks from the North nursery (closest to the dredging site). While low concentrations of metals were found for all nursery sites and time frames, one trace metal (Manganese) was significantly correlated with the observed differences in DNA methylation. Overall, the findings of this study support DNA methylation as a potential stress biomarker for sharks, even in the absence of a reference genome. Furthermore, the identification of genomic regions differentially methylated in response to stress provides a basis for future analyses aimed at identifying gene networks and subsequent physiological responses to these events. Collectively, these analyses will help improve shark population monitoring, management, and conservation in impacted areas.
format article
author Andria Paige Beal
Serena Hackerott
Bryan Franks
Samuel H Gruber
Kevin Feldheim
Jose M Eirin-Lopez
author_facet Andria Paige Beal
Serena Hackerott
Bryan Franks
Samuel H Gruber
Kevin Feldheim
Jose M Eirin-Lopez
author_sort Andria Paige Beal
title Epigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas
title_short Epigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas
title_full Epigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas
title_fullStr Epigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas
title_full_unstemmed Epigenetic responses in juvenile Lemon sharks (Negaprion brevirostris) during a coastal dredging episode in Bimini, Bahamas
title_sort epigenetic responses in juvenile lemon sharks (negaprion brevirostris) during a coastal dredging episode in bimini, bahamas
publisher Elsevier
publishDate 2021
url https://doaj.org/article/89a78afca31542708592a3f54ffe1ef7
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