Reconstructing unseen transmission events to infer dengue dynamics from viral sequences

Phylogeographic analyses can provide broad descriptions of the spread of pathogens between populations, but are limited by incomplete sampling. Here, the authors develop an inference framework that reconstructs sequential transmission events and use it to characterise dynamics of dengue in Thailand.

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Autores principales:	Henrik Salje, Amy Wesolowski, Tyler S. Brown, Mathew V. Kiang, Irina Maljkovic Berry, Noemie Lefrancq, Stefan Fernandez, Richard G. Jarman, Kriangsak Ruchusatsawat, Sopon Iamsirithaworn, Warunee P. Vandepitte, Piyarat Suntarattiwong, Jonathan M. Read, Chonticha Klungthong, Butsaya Thaisomboonsuk, Kenth Engø-Monsen, Caroline Buckee, Simon Cauchemez, Derek A. T. Cummings
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/89bc5a9d4b81405fa1f72c1cf87add00
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

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spelling	oai:doaj.org-article:89bc5a9d4b81405fa1f72c1cf87add002021-12-02T13:24:12ZReconstructing unseen transmission events to infer dengue dynamics from viral sequences10.1038/s41467-021-21888-92041-1723https://doaj.org/article/89bc5a9d4b81405fa1f72c1cf87add002021-03-01T00:00:00Zhttps://doi.org/10.1038/s41467-021-21888-9https://doaj.org/toc/2041-1723Phylogeographic analyses can provide broad descriptions of the spread of pathogens between populations, but are limited by incomplete sampling. Here, the authors develop an inference framework that reconstructs sequential transmission events and use it to characterise dynamics of dengue in Thailand.Henrik SaljeAmy WesolowskiTyler S. BrownMathew V. KiangIrina Maljkovic BerryNoemie LefrancqStefan FernandezRichard G. JarmanKriangsak RuchusatsawatSopon IamsirithawornWarunee P. VandepittePiyarat SuntarattiwongJonathan M. ReadChonticha KlungthongButsaya ThaisomboonsukKenth Engø-MonsenCaroline BuckeeSimon CauchemezDerek A. T. CummingsNature PortfolioarticleScienceQENNature Communications, Vol 12, Iss 1, Pp 1-10 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Henrik Salje Amy Wesolowski Tyler S. Brown Mathew V. Kiang Irina Maljkovic Berry Noemie Lefrancq Stefan Fernandez Richard G. Jarman Kriangsak Ruchusatsawat Sopon Iamsirithaworn Warunee P. Vandepitte Piyarat Suntarattiwong Jonathan M. Read Chonticha Klungthong Butsaya Thaisomboonsuk Kenth Engø-Monsen Caroline Buckee Simon Cauchemez Derek A. T. Cummings Reconstructing unseen transmission events to infer dengue dynamics from viral sequences
description	Phylogeographic analyses can provide broad descriptions of the spread of pathogens between populations, but are limited by incomplete sampling. Here, the authors develop an inference framework that reconstructs sequential transmission events and use it to characterise dynamics of dengue in Thailand.
format	article
author	Henrik Salje Amy Wesolowski Tyler S. Brown Mathew V. Kiang Irina Maljkovic Berry Noemie Lefrancq Stefan Fernandez Richard G. Jarman Kriangsak Ruchusatsawat Sopon Iamsirithaworn Warunee P. Vandepitte Piyarat Suntarattiwong Jonathan M. Read Chonticha Klungthong Butsaya Thaisomboonsuk Kenth Engø-Monsen Caroline Buckee Simon Cauchemez Derek A. T. Cummings
author_facet	Henrik Salje Amy Wesolowski Tyler S. Brown Mathew V. Kiang Irina Maljkovic Berry Noemie Lefrancq Stefan Fernandez Richard G. Jarman Kriangsak Ruchusatsawat Sopon Iamsirithaworn Warunee P. Vandepitte Piyarat Suntarattiwong Jonathan M. Read Chonticha Klungthong Butsaya Thaisomboonsuk Kenth Engø-Monsen Caroline Buckee Simon Cauchemez Derek A. T. Cummings
author_sort	Henrik Salje
title	Reconstructing unseen transmission events to infer dengue dynamics from viral sequences
title_short	Reconstructing unseen transmission events to infer dengue dynamics from viral sequences
title_full	Reconstructing unseen transmission events to infer dengue dynamics from viral sequences
title_fullStr	Reconstructing unseen transmission events to infer dengue dynamics from viral sequences
title_full_unstemmed	Reconstructing unseen transmission events to infer dengue dynamics from viral sequences
title_sort	reconstructing unseen transmission events to infer dengue dynamics from viral sequences
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/89bc5a9d4b81405fa1f72c1cf87add00
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Reconstructing unseen transmission events to infer dengue dynamics from viral sequences

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