Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia

Abstract. Effendi Y, Pambudi A, Pancoro A. 2019. Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia. Biodiversitas 20: 1939-1945. Fusarium wilt is one of the most devastating diseases in banana plantation which caused by soil-borne fungal...

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Autores principales:	YUNUS EFFENDI, A PAMBUDI, A PANCORO
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2019
Materias:	banana, fusarium oxysporum f.sp cubense, metagenomic, rhizospheral microbes Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/8ad5091efb804be984db497c904f028a
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spelling	oai:doaj.org-article:8ad5091efb804be984db497c904f028a2021-11-21T21:42:27ZMetagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia1412-033X2085-472210.13057/biodiv/d200721https://doaj.org/article/8ad5091efb804be984db497c904f028a2019-06-01T00:00:00Zhttps://smujo.id/biodiv/article/view/3719https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Effendi Y, Pambudi A, Pancoro A. 2019. Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia. Biodiversitas 20: 1939-1945. Fusarium wilt is one of the most devastating diseases in banana plantation which caused by soil-borne fungal pathogen Fusarium oxysporum f.sp. cubense. In this study, metagenomic analysis of 16SrRNA gene was performed for comparing composition, richness, and abundance of healthy soils and Fusarium oxysporum f.sp. cubense (Foc)-infected soil microbes in rhizospheral area of banana plants. Data showed about 10969 OTU and 10755 OTU of bacteria were identified in healthy soils and Foc-infected soils respectively. The Foc-infected soils showed higher species abundance than healthy soil (ACE index 73,6 and 68,8 respectively). However, healthy soils have more taxa richness than infected-soil (Fisher index 447,7 and 343,4 respectively). Beta diversity analysis indicated infected-soils had lower bacterial diversity in comparison with healthy soils. About 37 phyla were identified and no statistical difference between both soil conditions in the OTUs abundance. However, Acidobacteria (22%) and Verrucomicrobia (13%) tend more abundance in the health soils in comparison in the infected soils 19% and 10% respectively, whereas Proteobacteria was found more abundance in the infected soil (11%) in comparison with the health soil (7%). Interestingly, high abundance of Xanthomonadaceae, member of Proteobacteria was identified in the infected soils which might have a positive correlation with incidence of Fusarium development in the soils.YUNUS EFFENDIA PAMBUDIA PANCOROMBI & UNS Soloarticlebanana, fusarium oxysporum f.sp cubense, metagenomic, rhizospheral microbesBiology (General)QH301-705.5ENBiodiversitas, Vol 20, Iss 7 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	banana, fusarium oxysporum f.sp cubense, metagenomic, rhizospheral microbes Biology (General) QH301-705.5
spellingShingle	banana, fusarium oxysporum f.sp cubense, metagenomic, rhizospheral microbes Biology (General) QH301-705.5 YUNUS EFFENDI A PAMBUDI A PANCORO Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia
description	Abstract. Effendi Y, Pambudi A, Pancoro A. 2019. Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia. Biodiversitas 20: 1939-1945. Fusarium wilt is one of the most devastating diseases in banana plantation which caused by soil-borne fungal pathogen Fusarium oxysporum f.sp. cubense. In this study, metagenomic analysis of 16SrRNA gene was performed for comparing composition, richness, and abundance of healthy soils and Fusarium oxysporum f.sp. cubense (Foc)-infected soil microbes in rhizospheral area of banana plants. Data showed about 10969 OTU and 10755 OTU of bacteria were identified in healthy soils and Foc-infected soils respectively. The Foc-infected soils showed higher species abundance than healthy soil (ACE index 73,6 and 68,8 respectively). However, healthy soils have more taxa richness than infected-soil (Fisher index 447,7 and 343,4 respectively). Beta diversity analysis indicated infected-soils had lower bacterial diversity in comparison with healthy soils. About 37 phyla were identified and no statistical difference between both soil conditions in the OTUs abundance. However, Acidobacteria (22%) and Verrucomicrobia (13%) tend more abundance in the health soils in comparison in the infected soils 19% and 10% respectively, whereas Proteobacteria was found more abundance in the infected soil (11%) in comparison with the health soil (7%). Interestingly, high abundance of Xanthomonadaceae, member of Proteobacteria was identified in the infected soils which might have a positive correlation with incidence of Fusarium development in the soils.
format	article
author	YUNUS EFFENDI A PAMBUDI A PANCORO
author_facet	YUNUS EFFENDI A PAMBUDI A PANCORO
author_sort	YUNUS EFFENDI
title	Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia
title_short	Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia
title_full	Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia
title_fullStr	Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia
title_full_unstemmed	Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia
title_sort	metagenomic analysis of fusarium oxysporum f.sp. cubense-infected soil in banana plantation, sukabumi, indonesia
publisher	MBI & UNS Solo
publishDate	2019
url	https://doaj.org/article/8ad5091efb804be984db497c904f028a
work_keys_str_mv	AT yunuseffendi metagenomicanalysisoffusariumoxysporumfspcubenseinfectedsoilinbananaplantationsukabumiindonesia AT apambudi metagenomicanalysisoffusariumoxysporumfspcubenseinfectedsoilinbananaplantationsukabumiindonesia AT apancoro metagenomicanalysisoffusariumoxysporumfspcubenseinfectedsoilinbananaplantationsukabumiindonesia
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Metagenomic analysis of Fusarium oxysporum f.sp. cubense-infected soil in banana plantation, Sukabumi, Indonesia

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