Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

Here, Ratmann et al. show how viral deep sequencing data can be used to reconstruct HIV-1 transmission networks and to infer the direction of transmission in these networks.

Guardado en:

Detalles Bibliográficos
Autores principales:	Oliver Ratmann, M. Kate Grabowski, Matthew Hall, Tanya Golubchik, Chris Wymant, Lucie Abeler-Dörner, David Bonsall, Anne Hoppe, Andrew Leigh Brown, Tulio de Oliveira, Astrid Gall, Paul Kellam, Deenan Pillay, Joseph Kagaayi, Godfrey Kigozi, Thomas C. Quinn, Maria J. Wawer, Oliver Laeyendecker, David Serwadda, Ronald H. Gray, Christophe Fraser, PANGEA Consortium and Rakai Health Sciences Program
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2019
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/8e75db6f112d4dba8e390f4974b4825a
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:8e75db6f112d4dba8e390f4974b4825a
record_format	dspace
spelling	oai:doaj.org-article:8e75db6f112d4dba8e390f4974b4825a2021-12-02T16:57:12ZInferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis10.1038/s41467-019-09139-42041-1723https://doaj.org/article/8e75db6f112d4dba8e390f4974b4825a2019-03-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-09139-4https://doaj.org/toc/2041-1723Here, Ratmann et al. show how viral deep sequencing data can be used to reconstruct HIV-1 transmission networks and to infer the direction of transmission in these networks.Oliver RatmannM. Kate GrabowskiMatthew HallTanya GolubchikChris WymantLucie Abeler-DörnerDavid BonsallAnne HoppeAndrew Leigh BrownTulio de OliveiraAstrid GallPaul KellamDeenan PillayJoseph KagaayiGodfrey KigoziThomas C. QuinnMaria J. WawerOliver LaeyendeckerDavid SerwaddaRonald H. GrayChristophe FraserPANGEA Consortium and Rakai Health Sciences ProgramNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-13 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Oliver Ratmann M. Kate Grabowski Matthew Hall Tanya Golubchik Chris Wymant Lucie Abeler-Dörner David Bonsall Anne Hoppe Andrew Leigh Brown Tulio de Oliveira Astrid Gall Paul Kellam Deenan Pillay Joseph Kagaayi Godfrey Kigozi Thomas C. Quinn Maria J. Wawer Oliver Laeyendecker David Serwadda Ronald H. Gray Christophe Fraser PANGEA Consortium and Rakai Health Sciences Program Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
description	Here, Ratmann et al. show how viral deep sequencing data can be used to reconstruct HIV-1 transmission networks and to infer the direction of transmission in these networks.
format	article
author	Oliver Ratmann M. Kate Grabowski Matthew Hall Tanya Golubchik Chris Wymant Lucie Abeler-Dörner David Bonsall Anne Hoppe Andrew Leigh Brown Tulio de Oliveira Astrid Gall Paul Kellam Deenan Pillay Joseph Kagaayi Godfrey Kigozi Thomas C. Quinn Maria J. Wawer Oliver Laeyendecker David Serwadda Ronald H. Gray Christophe Fraser PANGEA Consortium and Rakai Health Sciences Program
author_facet	Oliver Ratmann M. Kate Grabowski Matthew Hall Tanya Golubchik Chris Wymant Lucie Abeler-Dörner David Bonsall Anne Hoppe Andrew Leigh Brown Tulio de Oliveira Astrid Gall Paul Kellam Deenan Pillay Joseph Kagaayi Godfrey Kigozi Thomas C. Quinn Maria J. Wawer Oliver Laeyendecker David Serwadda Ronald H. Gray Christophe Fraser PANGEA Consortium and Rakai Health Sciences Program
author_sort	Oliver Ratmann
title	Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
title_short	Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
title_full	Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
title_fullStr	Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
title_full_unstemmed	Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis
title_sort	inferring hiv-1 transmission networks and sources of epidemic spread in africa with deep-sequence phylogenetic analysis
publisher	Nature Portfolio
publishDate	2019
url	https://doaj.org/article/8e75db6f112d4dba8e390f4974b4825a
work_keys_str_mv	AT oliverratmann inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT mkategrabowski inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT matthewhall inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT tanyagolubchik inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT chriswymant inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT lucieabelerdorner inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT davidbonsall inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT annehoppe inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT andrewleighbrown inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT tuliodeoliveira inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT astridgall inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT paulkellam inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT deenanpillay inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT josephkagaayi inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT godfreykigozi inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT thomascquinn inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT mariajwawer inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT oliverlaeyendecker inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT davidserwadda inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT ronaldhgray inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT christophefraser inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis AT pangeaconsortiumandrakaihealthsciencesprogram inferringhiv1transmissionnetworksandsourcesofepidemicspreadinafricawithdeepsequencephylogeneticanalysis
_version_	1718382579791429632

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

Ejemplares similares