Gene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.

<h4>Background</h4>Despite its estimated high heritability, the genetic architecture leading to differences in cognitive performance remains poorly understood. Different cortical regions play important roles in normal cognitive functioning and impairment. Recently, we reported on sets of...

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Autores principales: Kari M Ersland, Andrea Christoforou, Christine Stansberg, Thomas Espeseth, Manuel Mattheisen, Morten Mattingsdal, Gudmundur A Hardarson, Thomas Hansen, Carla P D Fernandes, Sudheer Giddaluru, René Breuer, Jana Strohmaier, Srdjan Djurovic, Markus M Nöthen, Marcella Rietschel, Astri J Lundervold, Thomas Werge, Sven Cichon, Ole A Andreassen, Ivar Reinvang, Vidar M Steen, Stephanie Le Hellard
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spelling oai:doaj.org-article:8fc382b6d0cf4619a980614c796de04e2021-11-18T07:27:06ZGene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.1932-620310.1371/journal.pone.0031687https://doaj.org/article/8fc382b6d0cf4619a980614c796de04e2012-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22384057/?tool=EBIhttps://doaj.org/toc/1932-6203<h4>Background</h4>Despite its estimated high heritability, the genetic architecture leading to differences in cognitive performance remains poorly understood. Different cortical regions play important roles in normal cognitive functioning and impairment. Recently, we reported on sets of regionally enriched genes in three different cortical areas (frontomedial, temporal and occipital cortices) of the adult rat brain. It has been suggested that genes preferentially, or specifically, expressed in one region or organ reflect functional specialisation. Employing a gene-based approach to the analysis, we used the regionally enriched cortical genes to mine a genome-wide association study (GWAS) of the Norwegian Cognitive NeuroGenetics (NCNG) sample of healthy adults for association to nine psychometric tests measures. In addition, we explored GWAS data sets for the serious psychiatric disorders schizophrenia (SCZ) (n = 3 samples) and bipolar affective disorder (BP) (n = 3 samples), to which cognitive impairment is linked.<h4>Principal findings</h4>At the single gene level, the temporal cortex enriched gene RAR-related orphan receptor B (RORB) showed the strongest overall association, namely to a test of verbal intelligence (Vocabulary, P = 7.7E-04). We also applied gene set enrichment analysis (GSEA) to test the candidate genes, as gene sets, for enrichment of association signal in the NCNG GWAS and in GWASs of BP and of SCZ. We found that genes differentially expressed in the temporal cortex showed a significant enrichment of association signal in a test measure of non-verbal intelligence (Reasoning) in the NCNG sample.<h4>Conclusion</h4>Our gene-based approach suggests that RORB could be involved in verbal intelligence differences, while the genes enriched in the temporal cortex might be important to intellectual functions as measured by a test of reasoning in the healthy population. These findings warrant further replication in independent samples on cognitive traits.Kari M ErslandAndrea ChristoforouChristine StansbergThomas EspesethManuel MattheisenMorten MattingsdalGudmundur A HardarsonThomas HansenCarla P D FernandesSudheer GiddaluruRené BreuerJana StrohmaierSrdjan DjurovicMarkus M NöthenMarcella RietschelAstri J LundervoldThomas WergeSven CichonOle A AndreassenIvar ReinvangVidar M SteenStephanie Le HellardPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 7, Iss 2, p e31687 (2012)
institution DOAJ
collection DOAJ
language EN
topic Medicine
R
Science
Q
spellingShingle Medicine
R
Science
Q
Kari M Ersland
Andrea Christoforou
Christine Stansberg
Thomas Espeseth
Manuel Mattheisen
Morten Mattingsdal
Gudmundur A Hardarson
Thomas Hansen
Carla P D Fernandes
Sudheer Giddaluru
René Breuer
Jana Strohmaier
Srdjan Djurovic
Markus M Nöthen
Marcella Rietschel
Astri J Lundervold
Thomas Werge
Sven Cichon
Ole A Andreassen
Ivar Reinvang
Vidar M Steen
Stephanie Le Hellard
Gene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.
description <h4>Background</h4>Despite its estimated high heritability, the genetic architecture leading to differences in cognitive performance remains poorly understood. Different cortical regions play important roles in normal cognitive functioning and impairment. Recently, we reported on sets of regionally enriched genes in three different cortical areas (frontomedial, temporal and occipital cortices) of the adult rat brain. It has been suggested that genes preferentially, or specifically, expressed in one region or organ reflect functional specialisation. Employing a gene-based approach to the analysis, we used the regionally enriched cortical genes to mine a genome-wide association study (GWAS) of the Norwegian Cognitive NeuroGenetics (NCNG) sample of healthy adults for association to nine psychometric tests measures. In addition, we explored GWAS data sets for the serious psychiatric disorders schizophrenia (SCZ) (n = 3 samples) and bipolar affective disorder (BP) (n = 3 samples), to which cognitive impairment is linked.<h4>Principal findings</h4>At the single gene level, the temporal cortex enriched gene RAR-related orphan receptor B (RORB) showed the strongest overall association, namely to a test of verbal intelligence (Vocabulary, P = 7.7E-04). We also applied gene set enrichment analysis (GSEA) to test the candidate genes, as gene sets, for enrichment of association signal in the NCNG GWAS and in GWASs of BP and of SCZ. We found that genes differentially expressed in the temporal cortex showed a significant enrichment of association signal in a test measure of non-verbal intelligence (Reasoning) in the NCNG sample.<h4>Conclusion</h4>Our gene-based approach suggests that RORB could be involved in verbal intelligence differences, while the genes enriched in the temporal cortex might be important to intellectual functions as measured by a test of reasoning in the healthy population. These findings warrant further replication in independent samples on cognitive traits.
format article
author Kari M Ersland
Andrea Christoforou
Christine Stansberg
Thomas Espeseth
Manuel Mattheisen
Morten Mattingsdal
Gudmundur A Hardarson
Thomas Hansen
Carla P D Fernandes
Sudheer Giddaluru
René Breuer
Jana Strohmaier
Srdjan Djurovic
Markus M Nöthen
Marcella Rietschel
Astri J Lundervold
Thomas Werge
Sven Cichon
Ole A Andreassen
Ivar Reinvang
Vidar M Steen
Stephanie Le Hellard
author_facet Kari M Ersland
Andrea Christoforou
Christine Stansberg
Thomas Espeseth
Manuel Mattheisen
Morten Mattingsdal
Gudmundur A Hardarson
Thomas Hansen
Carla P D Fernandes
Sudheer Giddaluru
René Breuer
Jana Strohmaier
Srdjan Djurovic
Markus M Nöthen
Marcella Rietschel
Astri J Lundervold
Thomas Werge
Sven Cichon
Ole A Andreassen
Ivar Reinvang
Vidar M Steen
Stephanie Le Hellard
author_sort Kari M Ersland
title Gene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.
title_short Gene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.
title_full Gene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.
title_fullStr Gene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.
title_full_unstemmed Gene-based analysis of regionally enriched cortical genes in GWAS data sets of cognitive traits and psychiatric disorders.
title_sort gene-based analysis of regionally enriched cortical genes in gwas data sets of cognitive traits and psychiatric disorders.
publisher Public Library of Science (PLoS)
publishDate 2012
url https://doaj.org/article/8fc382b6d0cf4619a980614c796de04e
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