Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.

Soil salinity has very adverse effects on growth and yield of crop plants. Several salt tolerant wild accessions and cultivars are reported in soybean. Functional genomes of salt tolerant Glycine soja and a salt sensitive genotype of Glycine max were investigated to understand the mechanism of salt...

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Autores principales:	Zulfiqar Ali, Da Yong Zhang, Zhao Long Xu, Ling Xu, Jin Xin Yi, Xiao Lan He, Yi Hong Huang, Xiao Qing Liu, Asif Ali Khan, Richard M Trethowan, Hong Xiang Ma
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2012
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/90a33806387f4fb5a8f5c9a90a32a55f
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spelling	oai:doaj.org-article:90a33806387f4fb5a8f5c9a90a32a55f2021-11-18T08:07:20ZUncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.1932-620310.1371/journal.pone.0048819https://doaj.org/article/90a33806387f4fb5a8f5c9a90a32a55f2012-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23209559/pdf/?tool=EBIhttps://doaj.org/toc/1932-6203Soil salinity has very adverse effects on growth and yield of crop plants. Several salt tolerant wild accessions and cultivars are reported in soybean. Functional genomes of salt tolerant Glycine soja and a salt sensitive genotype of Glycine max were investigated to understand the mechanism of salt tolerance in soybean. For this purpose, four libraries were constructed for Tag sequencing on Illumina platform. We identify around 490 salt responsive genes which included a number of transcription factors, signaling proteins, translation factors and structural genes like transporters, multidrug resistance proteins, antiporters, chaperons, aquaporins etc. The gene expression levels and ratio of up/down-regulated genes was greater in tolerant plants. Translation related genes remained stable or showed slightly higher expression in tolerant plants under salinity stress. Further analyses of sequenced data and the annotations for gene ontology and pathways indicated that soybean adapts to salt stress through ABA biosynthesis and regulation of translation and signal transduction of structural genes. Manipulation of these pathways may mitigate the effect of salt stress thus enhancing salt tolerance.Zulfiqar AliDa Yong ZhangZhao Long XuLing XuJin Xin YiXiao Lan HeYi Hong HuangXiao Qing LiuAsif Ali KhanRichard M TrethowanHong Xiang MaPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 7, Iss 11, p e48819 (2012)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Zulfiqar Ali Da Yong Zhang Zhao Long Xu Ling Xu Jin Xin Yi Xiao Lan He Yi Hong Huang Xiao Qing Liu Asif Ali Khan Richard M Trethowan Hong Xiang Ma Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.
description	Soil salinity has very adverse effects on growth and yield of crop plants. Several salt tolerant wild accessions and cultivars are reported in soybean. Functional genomes of salt tolerant Glycine soja and a salt sensitive genotype of Glycine max were investigated to understand the mechanism of salt tolerance in soybean. For this purpose, four libraries were constructed for Tag sequencing on Illumina platform. We identify around 490 salt responsive genes which included a number of transcription factors, signaling proteins, translation factors and structural genes like transporters, multidrug resistance proteins, antiporters, chaperons, aquaporins etc. The gene expression levels and ratio of up/down-regulated genes was greater in tolerant plants. Translation related genes remained stable or showed slightly higher expression in tolerant plants under salinity stress. Further analyses of sequenced data and the annotations for gene ontology and pathways indicated that soybean adapts to salt stress through ABA biosynthesis and regulation of translation and signal transduction of structural genes. Manipulation of these pathways may mitigate the effect of salt stress thus enhancing salt tolerance.
format	article
author	Zulfiqar Ali Da Yong Zhang Zhao Long Xu Ling Xu Jin Xin Yi Xiao Lan He Yi Hong Huang Xiao Qing Liu Asif Ali Khan Richard M Trethowan Hong Xiang Ma
author_facet	Zulfiqar Ali Da Yong Zhang Zhao Long Xu Ling Xu Jin Xin Yi Xiao Lan He Yi Hong Huang Xiao Qing Liu Asif Ali Khan Richard M Trethowan Hong Xiang Ma
author_sort	Zulfiqar Ali
title	Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.
title_short	Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.
title_full	Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.
title_fullStr	Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.
title_full_unstemmed	Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.
title_sort	uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.
publisher	Public Library of Science (PLoS)
publishDate	2012
url	https://doaj.org/article/90a33806387f4fb5a8f5c9a90a32a55f
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Uncovering the salt response of soybean by unraveling its wild and cultivated functional genomes using tag sequencing.

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