The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool

Susanti R, Iswari RS, Fibriana F, Indriawati. 2018. The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool. Biodiversitas 19: 997-1003. The local duck DNA barcoding is still rarely conducted in Indonesia while DNA barcoding is extensively used as a tool...

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Autores principales:	R. SUSANTI, RETNO SRI ISWARI, FIDIA FIBRIANA, INDRIAWATI INDRIAWATI
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2018
Materias:	native duck central javanese duck coi gene dna barcode Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/90ee76b83ae34524b4c2dc923de1ed3f
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spelling	oai:doaj.org-article:90ee76b83ae34524b4c2dc923de1ed3f2021-11-16T14:03:00ZThe duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool1412-033X2085-472210.13057/biodiv/d190331https://doaj.org/article/90ee76b83ae34524b4c2dc923de1ed3f2018-05-01T00:00:00Zhttps://smujo.id/biodiv/article/view/2718https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Susanti R, Iswari RS, Fibriana F, Indriawati. 2018. The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool. Biodiversitas 19: 997-1003. The local duck DNA barcoding is still rarely conducted in Indonesia while DNA barcoding is extensively used as a tool of species identification and delineation tool. This study aimed to analyze the sequence and patterns of Central Javanese ducks mitochondrial cytochrome c oxidase subunit 1 (COI) gene. Feather samples of seven breeds of native duck were collected from traditional husbandries in Central Java. The samples were employed for DNA extraction and COI gene amplification. Five haplotypes were obtained from 35 samples, i.e., haplotype A, B, C, D, and E. Also, 9 variable sites with synonym substitution was detected in four nucleotides number 55, 61, 100, and 109; whereas five synonym substitutions were identified in the nucleotides number 36, 48, 51, 66, and 756. In conclusion, this study annotates that COI mtDNA gene is essential for local ducks barcoding system.R. SUSANTIRETNO SRI ISWARIFIDIA FIBRIANAINDRIAWATI INDRIAWATIMBI & UNS Soloarticlenative duckcentral javanese duckcoi genedna barcodeBiology (General)QH301-705.5ENBiodiversitas, Vol 19, Iss 3, Pp 997-1003 (2018)
institution	DOAJ
collection	DOAJ
language	EN
topic	native duck central javanese duck coi gene dna barcode Biology (General) QH301-705.5
spellingShingle	native duck central javanese duck coi gene dna barcode Biology (General) QH301-705.5 R. SUSANTI RETNO SRI ISWARI FIDIA FIBRIANA INDRIAWATI INDRIAWATI The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool
description	Susanti R, Iswari RS, Fibriana F, Indriawati. 2018. The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool. Biodiversitas 19: 997-1003. The local duck DNA barcoding is still rarely conducted in Indonesia while DNA barcoding is extensively used as a tool of species identification and delineation tool. This study aimed to analyze the sequence and patterns of Central Javanese ducks mitochondrial cytochrome c oxidase subunit 1 (COI) gene. Feather samples of seven breeds of native duck were collected from traditional husbandries in Central Java. The samples were employed for DNA extraction and COI gene amplification. Five haplotypes were obtained from 35 samples, i.e., haplotype A, B, C, D, and E. Also, 9 variable sites with synonym substitution was detected in four nucleotides number 55, 61, 100, and 109; whereas five synonym substitutions were identified in the nucleotides number 36, 48, 51, 66, and 756. In conclusion, this study annotates that COI mtDNA gene is essential for local ducks barcoding system.
format	article
author	R. SUSANTI RETNO SRI ISWARI FIDIA FIBRIANA INDRIAWATI INDRIAWATI
author_facet	R. SUSANTI RETNO SRI ISWARI FIDIA FIBRIANA INDRIAWATI INDRIAWATI
author_sort	R. SUSANTI
title	The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool
title_short	The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool
title_full	The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool
title_fullStr	The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool
title_full_unstemmed	The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool
title_sort	duck cytochrome oxidase i (coi) gene: sequence and patterns analysis for potential barcoding tool
publisher	MBI & UNS Solo
publishDate	2018
url	https://doaj.org/article/90ee76b83ae34524b4c2dc923de1ed3f
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The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool

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