Time-course global expression profiles of Chlamydomonas reinhardtii during photo-biological H₂ production.
We used a microarray study in order to compare the time course expression profiles of two Chlamydomonas reinhardtii strains, namely the high H₂ producing mutant stm6glc4 and its parental WT strain during H₂ production induced by sulfur starvation. Major cellular reorganizations in photosynthetic app...
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oai:doaj.org-article:92a80942ffee40c482d21fc3823758312021-11-18T07:31:16ZTime-course global expression profiles of Chlamydomonas reinhardtii during photo-biological H₂ production.1932-620310.1371/journal.pone.0029364https://doaj.org/article/92a80942ffee40c482d21fc3823758312011-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22242116/pdf/?tool=EBIhttps://doaj.org/toc/1932-6203We used a microarray study in order to compare the time course expression profiles of two Chlamydomonas reinhardtii strains, namely the high H₂ producing mutant stm6glc4 and its parental WT strain during H₂ production induced by sulfur starvation. Major cellular reorganizations in photosynthetic apparatus, sulfur and carbon metabolism upon H₂ production were confirmed as common to both strains. More importantly, our results pointed out factors which lead to the higher H₂ production in the mutant including a higher starch accumulation in the aerobic phase and a lower competition between the H₂ase pathway and alternative electron sinks within the H₂ production phase. Key candidate genes of interest with differential expression pattern include LHCSR3, essential for efficient energy quenching (qE). The reduced LHCSR3 protein expression in mutant stm6glc4 could be closely related to the high-light sensitive phenotype. H₂ measurements carried out with the LHCSR3 knock-out mutant npq4 however clearly demonstrated that a complete loss of this protein has almost no impact on H₂ yields under moderate light conditions. The nuclear gene disrupted in the high H₂ producing mutant stm6glc4 encodes for the mitochondrial transcription termination factor (mTERF) MOC1, whose expression strongly increases during -S-induced H₂ production in WT strains. Studies under phototrophic high-light conditions demonstrated that the presence of functional MOC1 is a prerequisite for proper LHCSR3 expression. Furthermore knock-down of MOC1 in a WT strain was shown to improve the total H₂ yield significantly suggesting that this strategy could be applied to further enhance H₂ production in other strains already displaying a high H₂ production capacity. By combining our array data with previously published metabolomics data we can now explain some of the phenotypic characteristics which lead to an elevated H₂ production in stm6glc4.Anh Vu NguyenJoerg ToepelSteven BurgessAndreas UhmeyerOlga BlifernezAnja DoebbeBen HankamerPeter NixonLutz WobbeOlaf KrusePublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 6, Iss 12, p e29364 (2011) |
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Medicine R Science Q Anh Vu Nguyen Joerg Toepel Steven Burgess Andreas Uhmeyer Olga Blifernez Anja Doebbe Ben Hankamer Peter Nixon Lutz Wobbe Olaf Kruse Time-course global expression profiles of Chlamydomonas reinhardtii during photo-biological H₂ production. |
| description |
We used a microarray study in order to compare the time course expression profiles of two Chlamydomonas reinhardtii strains, namely the high H₂ producing mutant stm6glc4 and its parental WT strain during H₂ production induced by sulfur starvation. Major cellular reorganizations in photosynthetic apparatus, sulfur and carbon metabolism upon H₂ production were confirmed as common to both strains. More importantly, our results pointed out factors which lead to the higher H₂ production in the mutant including a higher starch accumulation in the aerobic phase and a lower competition between the H₂ase pathway and alternative electron sinks within the H₂ production phase. Key candidate genes of interest with differential expression pattern include LHCSR3, essential for efficient energy quenching (qE). The reduced LHCSR3 protein expression in mutant stm6glc4 could be closely related to the high-light sensitive phenotype. H₂ measurements carried out with the LHCSR3 knock-out mutant npq4 however clearly demonstrated that a complete loss of this protein has almost no impact on H₂ yields under moderate light conditions. The nuclear gene disrupted in the high H₂ producing mutant stm6glc4 encodes for the mitochondrial transcription termination factor (mTERF) MOC1, whose expression strongly increases during -S-induced H₂ production in WT strains. Studies under phototrophic high-light conditions demonstrated that the presence of functional MOC1 is a prerequisite for proper LHCSR3 expression. Furthermore knock-down of MOC1 in a WT strain was shown to improve the total H₂ yield significantly suggesting that this strategy could be applied to further enhance H₂ production in other strains already displaying a high H₂ production capacity. By combining our array data with previously published metabolomics data we can now explain some of the phenotypic characteristics which lead to an elevated H₂ production in stm6glc4. |
| format |
article |
| author |
Anh Vu Nguyen Joerg Toepel Steven Burgess Andreas Uhmeyer Olga Blifernez Anja Doebbe Ben Hankamer Peter Nixon Lutz Wobbe Olaf Kruse |
| author_facet |
Anh Vu Nguyen Joerg Toepel Steven Burgess Andreas Uhmeyer Olga Blifernez Anja Doebbe Ben Hankamer Peter Nixon Lutz Wobbe Olaf Kruse |
| author_sort |
Anh Vu Nguyen |
| title |
Time-course global expression profiles of Chlamydomonas reinhardtii during photo-biological H₂ production. |
| title_short |
Time-course global expression profiles of Chlamydomonas reinhardtii during photo-biological H₂ production. |
| title_full |
Time-course global expression profiles of Chlamydomonas reinhardtii during photo-biological H₂ production. |
| title_fullStr |
Time-course global expression profiles of Chlamydomonas reinhardtii during photo-biological H₂ production. |
| title_full_unstemmed |
Time-course global expression profiles of Chlamydomonas reinhardtii during photo-biological H₂ production. |
| title_sort |
time-course global expression profiles of chlamydomonas reinhardtii during photo-biological h₂ production. |
| publisher |
Public Library of Science (PLoS) |
| publishDate |
2011 |
| url |
https://doaj.org/article/92a80942ffee40c482d21fc382375831 |
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