Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.

Non-retroviral RNA virus sequences (NRVSs) have been found in the chromosomes of vertebrates and fungi, but not plants. Here we report similarly endogenized NRVSs derived from plus-, negative-, and double-stranded RNA viruses in plant chromosomes. These sequences were found by searching public genom...

Descripción completa

Guardado en:

Detalles Bibliográficos
Autores principales:	Sotaro Chiba, Hideki Kondo, Akio Tani, Daisuke Saisho, Wataru Sakamoto, Satoko Kanematsu, Nobuhiro Suzuki
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2011
Materias:	Immunologic diseases. Allergy RC581-607 Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/930902c5ef3f40eeaa22cbccdda9d856
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:930902c5ef3f40eeaa22cbccdda9d856
record_format	dspace
spelling	oai:doaj.org-article:930902c5ef3f40eeaa22cbccdda9d8562021-11-18T06:03:12ZWidespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.1553-73661553-737410.1371/journal.ppat.1002146https://doaj.org/article/930902c5ef3f40eeaa22cbccdda9d8562011-07-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21779172/pdf/?tool=EBIhttps://doaj.org/toc/1553-7366https://doaj.org/toc/1553-7374Non-retroviral RNA virus sequences (NRVSs) have been found in the chromosomes of vertebrates and fungi, but not plants. Here we report similarly endogenized NRVSs derived from plus-, negative-, and double-stranded RNA viruses in plant chromosomes. These sequences were found by searching public genomic sequence databases, and, importantly, most NRVSs were subsequently detected by direct molecular analyses of plant DNAs. The most widespread NRVSs were related to the coat protein (CP) genes of the family Partitiviridae which have bisegmented dsRNA genomes, and included plant- and fungus-infecting members. The CP of a novel fungal virus (Rosellinia necatrix partitivirus 2, RnPV2) had the greatest sequence similarity to Arabidopsis thaliana ILR2, which is thought to regulate the activities of the phytohormone auxin, indole-3-acetic acid (IAA). Furthermore, partitivirus CP-like sequences much more closely related to plant partitiviruses than to RnPV2 were identified in a wide range of plant species. In addition, the nucleocapsid protein genes of cytorhabdoviruses and varicosaviruses were found in species of over 9 plant families, including Brassicaceae and Solanaceae. A replicase-like sequence of a betaflexivirus was identified in the cucumber genome. The pattern of occurrence of NRVSs and the phylogenetic analyses of NRVSs and related viruses indicate that multiple independent integrations into many plant lineages may have occurred. For example, one of the NRVSs was retained in Ar. thaliana but not in Ar. lyrata or other related Camelina species, whereas another NRVS displayed the reverse pattern. Our study has shown that single- and double-stranded RNA viral sequences are widespread in plant genomes, and shows the potential of genome integrated NRVSs to contribute to resolve unclear phylogenetic relationships of plant species.Sotaro ChibaHideki KondoAkio TaniDaisuke SaishoWataru SakamotoSatoko KanematsuNobuhiro SuzukiPublic Library of Science (PLoS)articleImmunologic diseases. AllergyRC581-607Biology (General)QH301-705.5ENPLoS Pathogens, Vol 7, Iss 7, p e1002146 (2011)
institution	DOAJ
collection	DOAJ
language	EN
topic	Immunologic diseases. Allergy RC581-607 Biology (General) QH301-705.5
spellingShingle	Immunologic diseases. Allergy RC581-607 Biology (General) QH301-705.5 Sotaro Chiba Hideki Kondo Akio Tani Daisuke Saisho Wataru Sakamoto Satoko Kanematsu Nobuhiro Suzuki Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.
description	Non-retroviral RNA virus sequences (NRVSs) have been found in the chromosomes of vertebrates and fungi, but not plants. Here we report similarly endogenized NRVSs derived from plus-, negative-, and double-stranded RNA viruses in plant chromosomes. These sequences were found by searching public genomic sequence databases, and, importantly, most NRVSs were subsequently detected by direct molecular analyses of plant DNAs. The most widespread NRVSs were related to the coat protein (CP) genes of the family Partitiviridae which have bisegmented dsRNA genomes, and included plant- and fungus-infecting members. The CP of a novel fungal virus (Rosellinia necatrix partitivirus 2, RnPV2) had the greatest sequence similarity to Arabidopsis thaliana ILR2, which is thought to regulate the activities of the phytohormone auxin, indole-3-acetic acid (IAA). Furthermore, partitivirus CP-like sequences much more closely related to plant partitiviruses than to RnPV2 were identified in a wide range of plant species. In addition, the nucleocapsid protein genes of cytorhabdoviruses and varicosaviruses were found in species of over 9 plant families, including Brassicaceae and Solanaceae. A replicase-like sequence of a betaflexivirus was identified in the cucumber genome. The pattern of occurrence of NRVSs and the phylogenetic analyses of NRVSs and related viruses indicate that multiple independent integrations into many plant lineages may have occurred. For example, one of the NRVSs was retained in Ar. thaliana but not in Ar. lyrata or other related Camelina species, whereas another NRVS displayed the reverse pattern. Our study has shown that single- and double-stranded RNA viral sequences are widespread in plant genomes, and shows the potential of genome integrated NRVSs to contribute to resolve unclear phylogenetic relationships of plant species.
format	article
author	Sotaro Chiba Hideki Kondo Akio Tani Daisuke Saisho Wataru Sakamoto Satoko Kanematsu Nobuhiro Suzuki
author_facet	Sotaro Chiba Hideki Kondo Akio Tani Daisuke Saisho Wataru Sakamoto Satoko Kanematsu Nobuhiro Suzuki
author_sort	Sotaro Chiba
title	Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.
title_short	Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.
title_full	Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.
title_fullStr	Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.
title_full_unstemmed	Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.
title_sort	widespread endogenization of genome sequences of non-retroviral rna viruses into plant genomes.
publisher	Public Library of Science (PLoS)
publishDate	2011
url	https://doaj.org/article/930902c5ef3f40eeaa22cbccdda9d856
work_keys_str_mv	AT sotarochiba widespreadendogenizationofgenomesequencesofnonretroviralrnavirusesintoplantgenomes AT hidekikondo widespreadendogenizationofgenomesequencesofnonretroviralrnavirusesintoplantgenomes AT akiotani widespreadendogenizationofgenomesequencesofnonretroviralrnavirusesintoplantgenomes AT daisukesaisho widespreadendogenizationofgenomesequencesofnonretroviralrnavirusesintoplantgenomes AT watarusakamoto widespreadendogenizationofgenomesequencesofnonretroviralrnavirusesintoplantgenomes AT satokokanematsu widespreadendogenizationofgenomesequencesofnonretroviralrnavirusesintoplantgenomes AT nobuhirosuzuki widespreadendogenizationofgenomesequencesofnonretroviralrnavirusesintoplantgenomes
_version_	1718424681466298368

Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.

Ejemplares similares