Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

A central problem in biodiversity estimation from genetic markers is the ability of algorithms to retain ‘true’ species while discarding artefacts. Here, the authors present a new post-clusturing curation algorithm using OTU co-occurrences to estimate plant biodiversity from soil samples.

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Autores principales:	Tobias Guldberg Frøslev, Rasmus Kjøller, Hans Henrik Bruun, Rasmus Ejrnæs, Ane Kirstine Brunbjerg, Carlotta Pietroni, Anders Johannes Hansen
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2017
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/975c7cf0009c45ba887ad7892c9a476d
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spelling	oai:doaj.org-article:975c7cf0009c45ba887ad7892c9a476d2021-12-02T15:37:02ZAlgorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates10.1038/s41467-017-01312-x2041-1723https://doaj.org/article/975c7cf0009c45ba887ad7892c9a476d2017-10-01T00:00:00Zhttps://doi.org/10.1038/s41467-017-01312-xhttps://doaj.org/toc/2041-1723A central problem in biodiversity estimation from genetic markers is the ability of algorithms to retain ‘true’ species while discarding artefacts. Here, the authors present a new post-clusturing curation algorithm using OTU co-occurrences to estimate plant biodiversity from soil samples.Tobias Guldberg FrøslevRasmus KjøllerHans Henrik BruunRasmus EjrnæsAne Kirstine BrunbjergCarlotta PietroniAnders Johannes HansenNature PortfolioarticleScienceQENNature Communications, Vol 8, Iss 1, Pp 1-11 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Tobias Guldberg Frøslev Rasmus Kjøller Hans Henrik Bruun Rasmus Ejrnæs Ane Kirstine Brunbjerg Carlotta Pietroni Anders Johannes Hansen Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
description	A central problem in biodiversity estimation from genetic markers is the ability of algorithms to retain ‘true’ species while discarding artefacts. Here, the authors present a new post-clusturing curation algorithm using OTU co-occurrences to estimate plant biodiversity from soil samples.
format	article
author	Tobias Guldberg Frøslev Rasmus Kjøller Hans Henrik Bruun Rasmus Ejrnæs Ane Kirstine Brunbjerg Carlotta Pietroni Anders Johannes Hansen
author_facet	Tobias Guldberg Frøslev Rasmus Kjøller Hans Henrik Bruun Rasmus Ejrnæs Ane Kirstine Brunbjerg Carlotta Pietroni Anders Johannes Hansen
author_sort	Tobias Guldberg Frøslev
title	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_short	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_full	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_fullStr	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_full_unstemmed	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_sort	algorithm for post-clustering curation of dna amplicon data yields reliable biodiversity estimates
publisher	Nature Portfolio
publishDate	2017
url	https://doaj.org/article/975c7cf0009c45ba887ad7892c9a476d
work_keys_str_mv	AT tobiasguldbergfrøslev algorithmforpostclusteringcurationofdnaamplicondatayieldsreliablebiodiversityestimates AT rasmuskjøller algorithmforpostclusteringcurationofdnaamplicondatayieldsreliablebiodiversityestimates AT hanshenrikbruun algorithmforpostclusteringcurationofdnaamplicondatayieldsreliablebiodiversityestimates AT rasmusejrnæs algorithmforpostclusteringcurationofdnaamplicondatayieldsreliablebiodiversityestimates AT anekirstinebrunbjerg algorithmforpostclusteringcurationofdnaamplicondatayieldsreliablebiodiversityestimates AT carlottapietroni algorithmforpostclusteringcurationofdnaamplicondatayieldsreliablebiodiversityestimates AT andersjohanneshansen algorithmforpostclusteringcurationofdnaamplicondatayieldsreliablebiodiversityestimates
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Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

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