The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China

Nyssa yunnanensis is a deciduous tree species in the family Nyssaceae within the order Cornales. As only eight individual trees and two populations have been recorded in China’s Yunnan province, this species has been listed among China’s national Class I protection species since 1999 and also among...

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Autores principales:	Weixue Mu, Jinpu Wei, Ting Yang, Yannan Fan, Le Cheng, Jinlong Yang, Ranchang Mu, Jie Liu, Jianming Zhao, Weibang Sun, Xun Xu, Xin Liu, Radoje Drmanac, Huan Liu
Formato:	article
Lenguaje:	EN
Publicado:	GigaScience Press 2020
Materias:	genetics and genomics plant genetics botany Electronic computers. Computer science QA75.5-76.95
Acceso en línea:	https://doi.org/10.46471/gigabyte.4 https://doaj.org/article/9d5da7c7053142b7b2c1705d1d60820e
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spelling	oai:doaj.org-article:9d5da7c7053142b7b2c1705d1d60820e2021-12-02T13:32:09ZThe draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, Chinahttps://doi.org/10.46471/gigabyte.42709-47152709-4715https://doaj.org/article/9d5da7c7053142b7b2c1705d1d60820e2020-08-01T00:00:00Zhttps://gigabytejournal.com/articles/4https://doaj.org/toc/2709-4715https://doaj.org/toc/2709-4715Nyssa yunnanensis is a deciduous tree species in the family Nyssaceae within the order Cornales. As only eight individual trees and two populations have been recorded in China’s Yunnan province, this species has been listed among China’s national Class I protection species since 1999 and also among 120 PSESP (Plant Species with Extremely Small Populations) in the Implementation Plan of Rescuing and Conserving China’s Plant Species with Extremely Small Populations (PSESP) (2011-2-15). Here, we present the draft genome assembly of N. yunnanensis. Using 10X Genomics linked-reads sequencing data, we carried out the de novo assembly and annotation analysis. The N. yunnanensis genome assembly is 1475 Mb in length, containing 288,519 scaffolds with a scaffold N50 length of 985.59 kb. Within the assembled genome, 799.51 Mb was identified as repetitive elements, accounting for 54.24% of the sequenced genome, and a total of 39,803 protein-coding genes were predicted. With the genomic characteristics of N. yunnanensis available, our study might facilitate future conservation biology studies to help protect this extremely threatened tree species.Weixue MuJinpu WeiTing YangYannan FanLe ChengJinlong YangRanchang MuJie LiuJianming ZhaoWeibang SunXun XuXin LiuRadoje DrmanacHuan LiuGigaScience Pressarticlegenetics and genomicsplant geneticsbotanyElectronic computers. Computer scienceQA75.5-76.95ENGigaByte, Vol 1, Pp 1-11 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	genetics and genomics plant genetics botany Electronic computers. Computer science QA75.5-76.95
spellingShingle	genetics and genomics plant genetics botany Electronic computers. Computer science QA75.5-76.95 Weixue Mu Jinpu Wei Ting Yang Yannan Fan Le Cheng Jinlong Yang Ranchang Mu Jie Liu Jianming Zhao Weibang Sun Xun Xu Xin Liu Radoje Drmanac Huan Liu The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
description	Nyssa yunnanensis is a deciduous tree species in the family Nyssaceae within the order Cornales. As only eight individual trees and two populations have been recorded in China’s Yunnan province, this species has been listed among China’s national Class I protection species since 1999 and also among 120 PSESP (Plant Species with Extremely Small Populations) in the Implementation Plan of Rescuing and Conserving China’s Plant Species with Extremely Small Populations (PSESP) (2011-2-15). Here, we present the draft genome assembly of N. yunnanensis. Using 10X Genomics linked-reads sequencing data, we carried out the de novo assembly and annotation analysis. The N. yunnanensis genome assembly is 1475 Mb in length, containing 288,519 scaffolds with a scaffold N50 length of 985.59 kb. Within the assembled genome, 799.51 Mb was identified as repetitive elements, accounting for 54.24% of the sequenced genome, and a total of 39,803 protein-coding genes were predicted. With the genomic characteristics of N. yunnanensis available, our study might facilitate future conservation biology studies to help protect this extremely threatened tree species.
format	article
author	Weixue Mu Jinpu Wei Ting Yang Yannan Fan Le Cheng Jinlong Yang Ranchang Mu Jie Liu Jianming Zhao Weibang Sun Xun Xu Xin Liu Radoje Drmanac Huan Liu
author_facet	Weixue Mu Jinpu Wei Ting Yang Yannan Fan Le Cheng Jinlong Yang Ranchang Mu Jie Liu Jianming Zhao Weibang Sun Xun Xu Xin Liu Radoje Drmanac Huan Liu
author_sort	Weixue Mu
title	The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
title_short	The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
title_full	The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
title_fullStr	The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
title_full_unstemmed	The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China
title_sort	draft genome assembly of the critically endangered nyssa yunnanensis, a plant species with extremely small populations endemic to yunnan province, china
publisher	GigaScience Press
publishDate	2020
url	https://doi.org/10.46471/gigabyte.4 https://doaj.org/article/9d5da7c7053142b7b2c1705d1d60820e
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The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China

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