Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software

A number of computational methods have been developed for calling structural variants (SVs) using short read sequencing data. Here, the authors perform a comprehensive benchmarking analysis comparing 10 general-purpose callers and provide recommendations for both users and methods developers.

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Autores principales:	Daniel L. Cameron, Leon Di Stefano, Anthony T. Papenfuss
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2019
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/9ec25ab66cb34e718430dc5a5a47bc15
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spelling	oai:doaj.org-article:9ec25ab66cb34e718430dc5a5a47bc152021-12-02T17:02:02ZComprehensive evaluation and characterisation of short read general-purpose structural variant calling software10.1038/s41467-019-11146-42041-1723https://doaj.org/article/9ec25ab66cb34e718430dc5a5a47bc152019-07-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-11146-4https://doaj.org/toc/2041-1723A number of computational methods have been developed for calling structural variants (SVs) using short read sequencing data. Here, the authors perform a comprehensive benchmarking analysis comparing 10 general-purpose callers and provide recommendations for both users and methods developers.Daniel L. CameronLeon Di StefanoAnthony T. PapenfussNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Daniel L. Cameron Leon Di Stefano Anthony T. Papenfuss Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
description	A number of computational methods have been developed for calling structural variants (SVs) using short read sequencing data. Here, the authors perform a comprehensive benchmarking analysis comparing 10 general-purpose callers and provide recommendations for both users and methods developers.
format	article
author	Daniel L. Cameron Leon Di Stefano Anthony T. Papenfuss
author_facet	Daniel L. Cameron Leon Di Stefano Anthony T. Papenfuss
author_sort	Daniel L. Cameron
title	Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
title_short	Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
title_full	Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
title_fullStr	Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
title_full_unstemmed	Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
title_sort	comprehensive evaluation and characterisation of short read general-purpose structural variant calling software
publisher	Nature Portfolio
publishDate	2019
url	https://doaj.org/article/9ec25ab66cb34e718430dc5a5a47bc15
work_keys_str_mv	AT daniellcameron comprehensiveevaluationandcharacterisationofshortreadgeneralpurposestructuralvariantcallingsoftware AT leondistefano comprehensiveevaluationandcharacterisationofshortreadgeneralpurposestructuralvariantcallingsoftware AT anthonytpapenfuss comprehensiveevaluationandcharacterisationofshortreadgeneralpurposestructuralvariantcallingsoftware
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Comprehensive evaluation and characterisation of short read general-purpose structural variant calling software

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