Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand

Abstract. Vanijajiva O, Pornpongrungrueng P. 2020. Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand. Biodiversitas 21: 3919-3928. Cissampelopsis is a small climbing tropical Asian genus of Aste...

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Autores principales:	ONGKARN VANIJAJIVA, Pimwadee Pornpongrungrueng
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2020
Materias:	cissampelopsis, ipbs, genetic diversity, population structure, thailand Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/9fae682536d1491f9f2cfa3aa5c84518
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spelling	oai:doaj.org-article:9fae682536d1491f9f2cfa3aa5c845182021-11-22T00:41:43ZInter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand1412-033X2085-472210.13057/biodiv/d210901https://doaj.org/article/9fae682536d1491f9f2cfa3aa5c845182020-08-01T00:00:00Zhttps://smujo.id/biodiv/article/view/6076https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Abstract. Vanijajiva O, Pornpongrungrueng P. 2020. Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand. Biodiversitas 21: 3919-3928. Cissampelopsis is a small climbing tropical Asian genus of Asteraceae-Senecioneae. In Thailand, the genus is represented by two species, C. corifolia and C. Volubilis, distributed through the mountain evergreen forest. Study on the genetic diversity and structure of populations of both Cissampelopsis species provide better understanding of the biology and pattern of species diversification in the genus. To identify the genetic diversity, we used the inter-primer binding site (iPBS) retrotransposon system, in 96 accessions of Cissampelopsis species collected from different regions in Thailand. A total of 120 iPBS bands were scored as presence? absence characters. Results from UPGMA and PCoA analyses indicated that C. corifolia and C. volubilis are different species. Genetic diversity and genetic differentiation among and within populations of C. volubilis is higher than C. corifolia. Molecular Variance (AMOVA) analysis of both species indicated that the genetic variance value within populations is higher than among populations of each species. Bayesian model-based STRUCTURE analysis detected two gene pools for both Cissampelopsis and showed admixture within individuals. Differences among the two Cissampelopsis species, in total diversities and levels of population differentiation, indicated that the genetic structure of Cissampelopsis populations are congruent with long-lived perennial habit with regional distribution, even for congeneric species, may vary considerably. This study suggests the effectiveness of the iPBS marker system to estimate the population genetic diversity and structure of Cissampelopsis genotypes.ONGKARN VANIJAJIVAPimwadee PornpongrungruengMBI & UNS Soloarticlecissampelopsis, ipbs, genetic diversity, population structure, thailandBiology (General)QH301-705.5ENBiodiversitas, Vol 21, Iss 9 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	cissampelopsis, ipbs, genetic diversity, population structure, thailand Biology (General) QH301-705.5
spellingShingle	cissampelopsis, ipbs, genetic diversity, population structure, thailand Biology (General) QH301-705.5 ONGKARN VANIJAJIVA Pimwadee Pornpongrungrueng Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand
description	Abstract. Vanijajiva O, Pornpongrungrueng P. 2020. Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand. Biodiversitas 21: 3919-3928. Cissampelopsis is a small climbing tropical Asian genus of Asteraceae-Senecioneae. In Thailand, the genus is represented by two species, C. corifolia and C. Volubilis, distributed through the mountain evergreen forest. Study on the genetic diversity and structure of populations of both Cissampelopsis species provide better understanding of the biology and pattern of species diversification in the genus. To identify the genetic diversity, we used the inter-primer binding site (iPBS) retrotransposon system, in 96 accessions of Cissampelopsis species collected from different regions in Thailand. A total of 120 iPBS bands were scored as presence? absence characters. Results from UPGMA and PCoA analyses indicated that C. corifolia and C. volubilis are different species. Genetic diversity and genetic differentiation among and within populations of C. volubilis is higher than C. corifolia. Molecular Variance (AMOVA) analysis of both species indicated that the genetic variance value within populations is higher than among populations of each species. Bayesian model-based STRUCTURE analysis detected two gene pools for both Cissampelopsis and showed admixture within individuals. Differences among the two Cissampelopsis species, in total diversities and levels of population differentiation, indicated that the genetic structure of Cissampelopsis populations are congruent with long-lived perennial habit with regional distribution, even for congeneric species, may vary considerably. This study suggests the effectiveness of the iPBS marker system to estimate the population genetic diversity and structure of Cissampelopsis genotypes.
format	article
author	ONGKARN VANIJAJIVA Pimwadee Pornpongrungrueng
author_facet	ONGKARN VANIJAJIVA Pimwadee Pornpongrungrueng
author_sort	ONGKARN VANIJAJIVA
title	Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand
title_short	Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand
title_full	Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand
title_fullStr	Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand
title_full_unstemmed	Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand
title_sort	inter-primer binding site (ipbs) markers reveal the population genetic diversity and structure of tropical climbing cissampelopsis (asteraceae) in thailand
publisher	MBI & UNS Solo
publishDate	2020
url	https://doaj.org/article/9fae682536d1491f9f2cfa3aa5c84518
work_keys_str_mv	AT ongkarnvanijajiva interprimerbindingsiteipbsmarkersrevealthepopulationgeneticdiversityandstructureoftropicalclimbingcissampelopsisasteraceaeinthailand AT pimwadeepornpongrungrueng interprimerbindingsiteipbsmarkersrevealthepopulationgeneticdiversityandstructureoftropicalclimbingcissampelopsisasteraceaeinthailand
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Inter-primer binding site (iPBS) markers reveal the population genetic diversity and structure of tropical climbing Cissampelopsis (Asteraceae) in Thailand

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