A BaSiC tool for background and shading correction of optical microscopy images

Accurate quantification of bioimaging data is often confounded by uneven illumination (shading) in space and background variation in time. Here the authors present BaSiC, a Fiji plugin solving both issues. It requires fewer input images and is more robust to artefacts than existing shading correctio...

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Autores principales:	Tingying Peng, Kurt Thorn, Timm Schroeder, Lichao Wang, Fabian J. Theis, Carsten Marr, Nassir Navab
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2017
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/a165331345d34839abf6352a2d8b7914
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id	oai:doaj.org-article:a165331345d34839abf6352a2d8b7914
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spelling	oai:doaj.org-article:a165331345d34839abf6352a2d8b79142021-12-02T15:38:44ZA BaSiC tool for background and shading correction of optical microscopy images10.1038/ncomms148362041-1723https://doaj.org/article/a165331345d34839abf6352a2d8b79142017-06-01T00:00:00Zhttps://doi.org/10.1038/ncomms14836https://doaj.org/toc/2041-1723Accurate quantification of bioimaging data is often confounded by uneven illumination (shading) in space and background variation in time. Here the authors present BaSiC, a Fiji plugin solving both issues. It requires fewer input images and is more robust to artefacts than existing shading correction tools.Tingying PengKurt ThornTimm SchroederLichao WangFabian J. TheisCarsten MarrNassir NavabNature PortfolioarticleScienceQENNature Communications, Vol 8, Iss 1, Pp 1-7 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Tingying Peng Kurt Thorn Timm Schroeder Lichao Wang Fabian J. Theis Carsten Marr Nassir Navab A BaSiC tool for background and shading correction of optical microscopy images
description	Accurate quantification of bioimaging data is often confounded by uneven illumination (shading) in space and background variation in time. Here the authors present BaSiC, a Fiji plugin solving both issues. It requires fewer input images and is more robust to artefacts than existing shading correction tools.
format	article
author	Tingying Peng Kurt Thorn Timm Schroeder Lichao Wang Fabian J. Theis Carsten Marr Nassir Navab
author_facet	Tingying Peng Kurt Thorn Timm Schroeder Lichao Wang Fabian J. Theis Carsten Marr Nassir Navab
author_sort	Tingying Peng
title	A BaSiC tool for background and shading correction of optical microscopy images
title_short	A BaSiC tool for background and shading correction of optical microscopy images
title_full	A BaSiC tool for background and shading correction of optical microscopy images
title_fullStr	A BaSiC tool for background and shading correction of optical microscopy images
title_full_unstemmed	A BaSiC tool for background and shading correction of optical microscopy images
title_sort	basic tool for background and shading correction of optical microscopy images
publisher	Nature Portfolio
publishDate	2017
url	https://doaj.org/article/a165331345d34839abf6352a2d8b7914
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A BaSiC tool for background and shading correction of optical microscopy images

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