Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more

Background Microbial communities associated with animals are known to be key elements in the development of their hosts. In marine environments, these communities are largely under the influence of the surrounding water. In aquaculture, understanding the interactions existing between the microbiotas...

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Autores principales:	Carolane Giraud, Nolwenn Callac, Maxime Beauvais, Jean-René Mailliez, Dominique Ansquer, Nazha Selmaoui-Folcher, Dominique Pham, Nelly Wabete, Viviane Boulo
Formato:	article
Lenguaje:	EN
Publicado:	PeerJ Inc. 2021
Materias:	Active microbiota Lineage transmission Eggs Nauplii Shrimps Rearing water Medicine R
Acceso en línea:	https://doaj.org/article/a2612d3f3c2a4043a494f0b676274f73
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spelling	oai:doaj.org-article:a2612d3f3c2a4043a494f0b676274f732021-11-17T15:05:05ZPotential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more10.7717/peerj.122412167-8359https://doaj.org/article/a2612d3f3c2a4043a494f0b676274f732021-11-01T00:00:00Zhttps://peerj.com/articles/12241.pdfhttps://peerj.com/articles/12241/https://doaj.org/toc/2167-8359Background Microbial communities associated with animals are known to be key elements in the development of their hosts. In marine environments, these communities are largely under the influence of the surrounding water. In aquaculture, understanding the interactions existing between the microbiotas of farmed species and their rearing environment could help establish precise bacterial management. Method In light of these facts, we studied the active microbial communities associated with the eggs and the nauplii of the Pacific blue shrimp (Litopenaeus stylirostris) and their rearing water. All samples were collected in September 2018, November 2018 and February 2019. After RNA extractions, two distinct Illumina HiSeq sequencings were performed. Due to different sequencing depths and in order to compare samples, data were normalized using the Count Per Million method. Results We found a core microbiota made of taxa related to Aestuariibacter, Alteromonas, Vibrio, SAR11, HIMB11, AEGEAN 169 marine group and Candidatus Endobugula associated with all the samples indicating that these bacterial communities could be transferred from the water to the animals. We also highlighted specific bacterial taxa in the eggs and the nauplii affiliated to Pseudomonas, Corynebacterium, Acinetobacter, Labrenzia, Rothia, Thalassolituus, Marinobacter, Aureispira, Oleiphilus, Profundimonas and Marinobacterium genera suggesting a possible prokaryotic vertical transmission from the breeders to their offspring. This study is the first to focus on the active microbiota associated with early developmental stages of a farmed shrimp species and could serve as a basis to comprehend the microbial interactions involved throughout the whole rearing process.Carolane GiraudNolwenn CallacMaxime BeauvaisJean-René MailliezDominique AnsquerNazha Selmaoui-FolcherDominique PhamNelly WabeteViviane BouloPeerJ Inc.articleActive microbiotaLineage transmissionEggsNaupliiShrimpsRearing waterMedicineRENPeerJ, Vol 9, p e12241 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Active microbiota Lineage transmission Eggs Nauplii Shrimps Rearing water Medicine R
spellingShingle	Active microbiota Lineage transmission Eggs Nauplii Shrimps Rearing water Medicine R Carolane Giraud Nolwenn Callac Maxime Beauvais Jean-René Mailliez Dominique Ansquer Nazha Selmaoui-Folcher Dominique Pham Nelly Wabete Viviane Boulo Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more
description	Background Microbial communities associated with animals are known to be key elements in the development of their hosts. In marine environments, these communities are largely under the influence of the surrounding water. In aquaculture, understanding the interactions existing between the microbiotas of farmed species and their rearing environment could help establish precise bacterial management. Method In light of these facts, we studied the active microbial communities associated with the eggs and the nauplii of the Pacific blue shrimp (Litopenaeus stylirostris) and their rearing water. All samples were collected in September 2018, November 2018 and February 2019. After RNA extractions, two distinct Illumina HiSeq sequencings were performed. Due to different sequencing depths and in order to compare samples, data were normalized using the Count Per Million method. Results We found a core microbiota made of taxa related to Aestuariibacter, Alteromonas, Vibrio, SAR11, HIMB11, AEGEAN 169 marine group and Candidatus Endobugula associated with all the samples indicating that these bacterial communities could be transferred from the water to the animals. We also highlighted specific bacterial taxa in the eggs and the nauplii affiliated to Pseudomonas, Corynebacterium, Acinetobacter, Labrenzia, Rothia, Thalassolituus, Marinobacter, Aureispira, Oleiphilus, Profundimonas and Marinobacterium genera suggesting a possible prokaryotic vertical transmission from the breeders to their offspring. This study is the first to focus on the active microbiota associated with early developmental stages of a farmed shrimp species and could serve as a basis to comprehend the microbial interactions involved throughout the whole rearing process.
format	article
author	Carolane Giraud Nolwenn Callac Maxime Beauvais Jean-René Mailliez Dominique Ansquer Nazha Selmaoui-Folcher Dominique Pham Nelly Wabete Viviane Boulo
author_facet	Carolane Giraud Nolwenn Callac Maxime Beauvais Jean-René Mailliez Dominique Ansquer Nazha Selmaoui-Folcher Dominique Pham Nelly Wabete Viviane Boulo
author_sort	Carolane Giraud
title	Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more
title_short	Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more
title_full	Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more
title_fullStr	Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more
title_full_unstemmed	Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more
title_sort	potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp litopenaeus stylirostris: possible influence of the rearing water and more
publisher	PeerJ Inc.
publishDate	2021
url	https://doaj.org/article/a2612d3f3c2a4043a494f0b676274f73
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Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris: possible influence of the rearing water and more

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