Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening

Abstract Proteins encoded by MADS-box genes are important transcription factors involved in the regulation of flowering plant growth and development. Currently, no systematic information exists regarding the MADS-box family in the important tropical fruit banana. Ninety-six MADS-box genes were ident...

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Autores principales:	Juhua Liu, Jing Zhang, Jianbin Zhang, Hongxia Miao, Jingyi Wang, Pengzhao Gao, Wei Hu, Caihong Jia, Zhuo Wang, Biyu Xu, Zhiqiang Jin
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2017
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/a2c7d639e62040a2bbc124ce1efc8362
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spelling	oai:doaj.org-article:a2c7d639e62040a2bbc124ce1efc83622021-12-02T15:06:03ZGenome-wide analysis of banana MADS-box family closely related to fruit development and ripening10.1038/s41598-017-03897-12045-2322https://doaj.org/article/a2c7d639e62040a2bbc124ce1efc83622017-06-01T00:00:00Zhttps://doi.org/10.1038/s41598-017-03897-1https://doaj.org/toc/2045-2322Abstract Proteins encoded by MADS-box genes are important transcription factors involved in the regulation of flowering plant growth and development. Currently, no systematic information exists regarding the MADS-box family in the important tropical fruit banana. Ninety-six MADS-box genes were identified from the banana (Pahang) A genome. Phylogenetic analysis indicated that Musa acuminata MCM1-AGAMOUS- DEFICIENS-SRF (MaMADS) could be divided into MIKCc, MIKC*, Mα/β and Mγ groups. MIKCc could be further divided into 11 subfamilies, which was further supported by conserved motif and gene structure analyses. Transcriptome analysis on the Feng Jiao (FJ) and BaXi Jiao (BX) banana cultivars revealed that MaMADS genes are differentially expressed in various organs, at different fruit development and ripening stages, indicating the involvement of these genes in fruit development and ripening processes. Interactive network analysis indicated that MaMADS24 and 49 not only interacted with MaMADS proteins themselves, but also interacted with hormone-response proteins, ethylene signal transduction and biosynthesis-related proteins, starch biosynthesis proteins and metabolism-related proteins. This systematic analysis identified candidate MaMADS genes related to fruit development and ripening for further functional characterization in plants, and also provided new insights into the transcriptional regulation of MaMADS genes, facilitating the future genetic manipulation of MADS-mediated fruit development and ripening.Juhua LiuJing ZhangJianbin ZhangHongxia MiaoJingyi WangPengzhao GaoWei HuCaihong JiaZhuo WangBiyu XuZhiqiang JinNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 7, Iss 1, Pp 1-13 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Juhua Liu Jing Zhang Jianbin Zhang Hongxia Miao Jingyi Wang Pengzhao Gao Wei Hu Caihong Jia Zhuo Wang Biyu Xu Zhiqiang Jin Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening
description	Abstract Proteins encoded by MADS-box genes are important transcription factors involved in the regulation of flowering plant growth and development. Currently, no systematic information exists regarding the MADS-box family in the important tropical fruit banana. Ninety-six MADS-box genes were identified from the banana (Pahang) A genome. Phylogenetic analysis indicated that Musa acuminata MCM1-AGAMOUS- DEFICIENS-SRF (MaMADS) could be divided into MIKCc, MIKC*, Mα/β and Mγ groups. MIKCc could be further divided into 11 subfamilies, which was further supported by conserved motif and gene structure analyses. Transcriptome analysis on the Feng Jiao (FJ) and BaXi Jiao (BX) banana cultivars revealed that MaMADS genes are differentially expressed in various organs, at different fruit development and ripening stages, indicating the involvement of these genes in fruit development and ripening processes. Interactive network analysis indicated that MaMADS24 and 49 not only interacted with MaMADS proteins themselves, but also interacted with hormone-response proteins, ethylene signal transduction and biosynthesis-related proteins, starch biosynthesis proteins and metabolism-related proteins. This systematic analysis identified candidate MaMADS genes related to fruit development and ripening for further functional characterization in plants, and also provided new insights into the transcriptional regulation of MaMADS genes, facilitating the future genetic manipulation of MADS-mediated fruit development and ripening.
format	article
author	Juhua Liu Jing Zhang Jianbin Zhang Hongxia Miao Jingyi Wang Pengzhao Gao Wei Hu Caihong Jia Zhuo Wang Biyu Xu Zhiqiang Jin
author_facet	Juhua Liu Jing Zhang Jianbin Zhang Hongxia Miao Jingyi Wang Pengzhao Gao Wei Hu Caihong Jia Zhuo Wang Biyu Xu Zhiqiang Jin
author_sort	Juhua Liu
title	Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening
title_short	Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening
title_full	Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening
title_fullStr	Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening
title_full_unstemmed	Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening
title_sort	genome-wide analysis of banana mads-box family closely related to fruit development and ripening
publisher	Nature Portfolio
publishDate	2017
url	https://doaj.org/article/a2c7d639e62040a2bbc124ce1efc8362
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_version_	1718388601391153152

Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening

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