Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia

SQUAMOSA promoter-binding protein-like (SPL) transcription factors are very important for the plant growth and development. Here 15 RoSPLs were identified in Rubus occidentalis. The conserved domains and motifs, phylogenetic relationships, posttranscriptional regulation, and physiological function o...

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Autores principales:	Jiang Xuwen, Chen Peng, Zhang Xiaowen, Liu Qizhi, Li Heqin
Formato:	article
Lenguaje:	EN
Publicado:	De Gruyter 2021
Materias:	spl gene family phylogenetic analysis mir156 functional divergence rosaceae species Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/a5e0e2cccd4e4281b498ee18c385d6ad
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spelling	oai:doaj.org-article:a5e0e2cccd4e4281b498ee18c385d6ad2021-12-05T14:10:40ZComparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia2391-541210.1515/biol-2021-0020https://doaj.org/article/a5e0e2cccd4e4281b498ee18c385d6ad2021-02-01T00:00:00Zhttps://doi.org/10.1515/biol-2021-0020https://doaj.org/toc/2391-5412SQUAMOSA promoter-binding protein-like (SPL) transcription factors are very important for the plant growth and development. Here 15 RoSPLs were identified in Rubus occidentalis. The conserved domains and motifs, phylogenetic relationships, posttranscriptional regulation, and physiological function of the 92 SPL family genes in Fragaria vesca, Malus domestica, Prunus persica, R. occidentalis, and Pyrus pyrifolia were analyzed. Sequence alignment and phylogenetic analysis showed the SPL proteins had sequence conservation, some FvSPLs could be lost or developed, and there was a closer relationship between M. domestica and P. pyrifolia, F. vesca and R. occidentalis, respectively. Genes with similar motifs clustering together in the same group had their functional redundancy. Based on the function of SPLs in Arabidopsis thaliana, these SPLs could be involved in vegetative transition from juvenile to adult, morphological change in the reproductive phase, anthocyanin biosynthesis, and defense stress. Forty-eight SPLs had complementary sequences of miR156, of which nine PrpSPLs in P. persica and eight RoSPLs in R. occidentalis as the potential targets of miR156 were reported for the first time, suggesting the conservative regulatory effects of miR156 and indicating the roles of miR156-SPL modules in plant growth, development, and defense response. It provides a basic understanding of SPLs in Rosaceae plants.Jiang XuwenChen PengZhang XiaowenLiu QizhiLi HeqinDe Gruyterarticlespl gene familyphylogenetic analysismir156functional divergencerosaceae speciesBiology (General)QH301-705.5ENOpen Life Sciences, Vol 16, Iss 1, Pp 160-171 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	spl gene family phylogenetic analysis mir156 functional divergence rosaceae species Biology (General) QH301-705.5
spellingShingle	spl gene family phylogenetic analysis mir156 functional divergence rosaceae species Biology (General) QH301-705.5 Jiang Xuwen Chen Peng Zhang Xiaowen Liu Qizhi Li Heqin Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia
description	SQUAMOSA promoter-binding protein-like (SPL) transcription factors are very important for the plant growth and development. Here 15 RoSPLs were identified in Rubus occidentalis. The conserved domains and motifs, phylogenetic relationships, posttranscriptional regulation, and physiological function of the 92 SPL family genes in Fragaria vesca, Malus domestica, Prunus persica, R. occidentalis, and Pyrus pyrifolia were analyzed. Sequence alignment and phylogenetic analysis showed the SPL proteins had sequence conservation, some FvSPLs could be lost or developed, and there was a closer relationship between M. domestica and P. pyrifolia, F. vesca and R. occidentalis, respectively. Genes with similar motifs clustering together in the same group had their functional redundancy. Based on the function of SPLs in Arabidopsis thaliana, these SPLs could be involved in vegetative transition from juvenile to adult, morphological change in the reproductive phase, anthocyanin biosynthesis, and defense stress. Forty-eight SPLs had complementary sequences of miR156, of which nine PrpSPLs in P. persica and eight RoSPLs in R. occidentalis as the potential targets of miR156 were reported for the first time, suggesting the conservative regulatory effects of miR156 and indicating the roles of miR156-SPL modules in plant growth, development, and defense response. It provides a basic understanding of SPLs in Rosaceae plants.
format	article
author	Jiang Xuwen Chen Peng Zhang Xiaowen Liu Qizhi Li Heqin
author_facet	Jiang Xuwen Chen Peng Zhang Xiaowen Liu Qizhi Li Heqin
author_sort	Jiang Xuwen
title	Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia
title_short	Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia
title_full	Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia
title_fullStr	Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia
title_full_unstemmed	Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia
title_sort	comparative analysis of the spl gene family in five rosaceae species: fragaria vesca, malus domestica, prunus persica, rubus occidentalis, and pyrus pyrifolia
publisher	De Gruyter
publishDate	2021
url	https://doaj.org/article/a5e0e2cccd4e4281b498ee18c385d6ad
work_keys_str_mv	AT jiangxuwen comparativeanalysisofthesplgenefamilyinfiverosaceaespeciesfragariavescamalusdomesticaprunuspersicarubusoccidentalisandpyruspyrifolia AT chenpeng comparativeanalysisofthesplgenefamilyinfiverosaceaespeciesfragariavescamalusdomesticaprunuspersicarubusoccidentalisandpyruspyrifolia AT zhangxiaowen comparativeanalysisofthesplgenefamilyinfiverosaceaespeciesfragariavescamalusdomesticaprunuspersicarubusoccidentalisandpyruspyrifolia AT liuqizhi comparativeanalysisofthesplgenefamilyinfiverosaceaespeciesfragariavescamalusdomesticaprunuspersicarubusoccidentalisandpyruspyrifolia AT liheqin comparativeanalysisofthesplgenefamilyinfiverosaceaespeciesfragariavescamalusdomesticaprunuspersicarubusoccidentalisandpyruspyrifolia
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Comparative analysis of the SPL gene family in five Rosaceae species: Fragaria vesca, Malus domestica, Prunus persica, Rubus occidentalis, and Pyrus pyrifolia

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