Identification of Potential Early Diagnostic Biomarkers of Sepsis
Zhenhua Li,1,2,* Bin Huang,2,* Wenfeng Yi,2,* Fei Wang,1 Shizhuang Wei,1 Huaixing Yan,1 Pan Qin,1 Donghua Zou,1 Rongguo Wei,3 Nian Chen4 1Department of Emergency Medicine, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China; 2Intensive C...
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2021
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oai:doaj.org-article:a6af02f670a046cdacd94736e41f71cd2021-12-02T14:35:25ZIdentification of Potential Early Diagnostic Biomarkers of Sepsis1178-7031https://doaj.org/article/a6af02f670a046cdacd94736e41f71cd2021-03-01T00:00:00Zhttps://www.dovepress.com/identification-of-potential-early-diagnostic-biomarkers-of-sepsis-peer-reviewed-article-JIRhttps://doaj.org/toc/1178-7031Zhenhua Li,1,2,* Bin Huang,2,* Wenfeng Yi,2,* Fei Wang,1 Shizhuang Wei,1 Huaixing Yan,1 Pan Qin,1 Donghua Zou,1 Rongguo Wei,3 Nian Chen4 1Department of Emergency Medicine, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China; 2Intensive Care Unit, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China; 3Department of Clinical Laboratory, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China; 4Department of Infectious Diseases, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China*These authors contributed equally to this workCorrespondence: Rongguo Wei; Nian Chen Email unwrong@126.com; chennian1111@163.comObjective: The goal of this article was to identify potential biomarkers for early diagnosis of sepsis in order to improve their survival.Methods: We analyzed differential gene expression between adult sepsis patients and controls in the GSE54514 dataset. Coexpression analysis was used to cluster coexpression modules, and enrichment analysis was performed on module genes. We also analyzed differential gene expression between neonatal sepsis patients and controls in the GSE25504 dataset, and we identified the subset of differentially expressed genes (DEGs) common to neonates and adults. All samples in the GSE54514 dataset were randomly divided into training and validation sets, and diagnostic signatures were constructed using least absolute shrink and selection operator (LASSO) regression. The key gene signature was screened for diagnostic value based on area under the receiver operating characteristic curve (AUC). STEM software identified dysregulated genes associated with sepsis-associated mortality. The ssGSEA method was used to quantify differences in immune cell infiltration between sepsis and control samples.Results: A total of 6316 DEGs in GSE54514 were obtained spanning 10 modules. Module genes were mainly enriched in immune and metabolic responses. Screening 51 genes from among common genes based on AUC > 0.7 led to a LASSO model for the training set. We obtained a 25-gene signature, which we validated in the validation set and in the GSE25504 dataset. Among the signature genes, SLC2A6, C1ORF55, DUSP5 and RHOB were recognized as key genes (AUC > 0.75) in both the GSE54514 and GSE25504 datasets. SLC2A6 was identified by STEM as associated with sepsis-associated mortality and showed the strongest positive correlation with infiltration levels of Th1 cells.Conclusion: In summary, our four key genes may have important implications for the early diagnosis of sepsis patients. In particular, SLC2A6 may be a critical biomarker for predicting survival in sepsis.Keywords: sepsis, early diagnosis, LASSO model, SLC2A6, WGCNA, diagnostic biomarkerLi ZHuang BYi WWang FWei SYan HQin PZou DWei RChen NDove Medical Pressarticlesepsisearly diagnosislasso modelslc2a6wgcnadiagnostic biomarkerPathologyRB1-214Therapeutics. PharmacologyRM1-950ENJournal of Inflammation Research, Vol Volume 14, Pp 621-631 (2021) |
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sepsis early diagnosis lasso model slc2a6 wgcna diagnostic biomarker Pathology RB1-214 Therapeutics. Pharmacology RM1-950 |
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sepsis early diagnosis lasso model slc2a6 wgcna diagnostic biomarker Pathology RB1-214 Therapeutics. Pharmacology RM1-950 Li Z Huang B Yi W Wang F Wei S Yan H Qin P Zou D Wei R Chen N Identification of Potential Early Diagnostic Biomarkers of Sepsis |
| description |
Zhenhua Li,1,2,* Bin Huang,2,* Wenfeng Yi,2,* Fei Wang,1 Shizhuang Wei,1 Huaixing Yan,1 Pan Qin,1 Donghua Zou,1 Rongguo Wei,3 Nian Chen4 1Department of Emergency Medicine, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China; 2Intensive Care Unit, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China; 3Department of Clinical Laboratory, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China; 4Department of Infectious Diseases, The Fifth Affiliated Hospital of Guangxi Medical University, Nanning, 530022, People’s Republic of China*These authors contributed equally to this workCorrespondence: Rongguo Wei; Nian Chen Email unwrong@126.com; chennian1111@163.comObjective: The goal of this article was to identify potential biomarkers for early diagnosis of sepsis in order to improve their survival.Methods: We analyzed differential gene expression between adult sepsis patients and controls in the GSE54514 dataset. Coexpression analysis was used to cluster coexpression modules, and enrichment analysis was performed on module genes. We also analyzed differential gene expression between neonatal sepsis patients and controls in the GSE25504 dataset, and we identified the subset of differentially expressed genes (DEGs) common to neonates and adults. All samples in the GSE54514 dataset were randomly divided into training and validation sets, and diagnostic signatures were constructed using least absolute shrink and selection operator (LASSO) regression. The key gene signature was screened for diagnostic value based on area under the receiver operating characteristic curve (AUC). STEM software identified dysregulated genes associated with sepsis-associated mortality. The ssGSEA method was used to quantify differences in immune cell infiltration between sepsis and control samples.Results: A total of 6316 DEGs in GSE54514 were obtained spanning 10 modules. Module genes were mainly enriched in immune and metabolic responses. Screening 51 genes from among common genes based on AUC > 0.7 led to a LASSO model for the training set. We obtained a 25-gene signature, which we validated in the validation set and in the GSE25504 dataset. Among the signature genes, SLC2A6, C1ORF55, DUSP5 and RHOB were recognized as key genes (AUC > 0.75) in both the GSE54514 and GSE25504 datasets. SLC2A6 was identified by STEM as associated with sepsis-associated mortality and showed the strongest positive correlation with infiltration levels of Th1 cells.Conclusion: In summary, our four key genes may have important implications for the early diagnosis of sepsis patients. In particular, SLC2A6 may be a critical biomarker for predicting survival in sepsis.Keywords: sepsis, early diagnosis, LASSO model, SLC2A6, WGCNA, diagnostic biomarker |
| format |
article |
| author |
Li Z Huang B Yi W Wang F Wei S Yan H Qin P Zou D Wei R Chen N |
| author_facet |
Li Z Huang B Yi W Wang F Wei S Yan H Qin P Zou D Wei R Chen N |
| author_sort |
Li Z |
| title |
Identification of Potential Early Diagnostic Biomarkers of Sepsis |
| title_short |
Identification of Potential Early Diagnostic Biomarkers of Sepsis |
| title_full |
Identification of Potential Early Diagnostic Biomarkers of Sepsis |
| title_fullStr |
Identification of Potential Early Diagnostic Biomarkers of Sepsis |
| title_full_unstemmed |
Identification of Potential Early Diagnostic Biomarkers of Sepsis |
| title_sort |
identification of potential early diagnostic biomarkers of sepsis |
| publisher |
Dove Medical Press |
| publishDate |
2021 |
| url |
https://doaj.org/article/a6af02f670a046cdacd94736e41f71cd |
| work_keys_str_mv |
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