Diversity measures in environmental sequences are highly dependent on alignment quality--data from ITS and new LSU primers targeting basidiomycetes.
The ribosomal DNA comprised of the ITS1-5.8S-ITS2 regions is widely used as a fungal marker in molecular ecology and systematics but cannot be aligned with confidence across genetically distant taxa. In order to study the diversity of Agaricomycotina in forest soils, we designed primers targeting th...
Guardado en:
Autores principales: | Dirk Krüger, Danuta Kapturska, Christiane Fischer, Rolf Daniel, Tesfaye Wubet |
---|---|
Formato: | article |
Lenguaje: | EN |
Publicado: |
Public Library of Science (PLoS)
2012
|
Materias: | |
Acceso en línea: | https://doaj.org/article/a7bc57283a5d488a80fae6b6756610ed |
Etiquetas: |
Agregar Etiqueta
Sin Etiquetas, Sea el primero en etiquetar este registro!
|
Ejemplares similares
-
Strobilurin biosynthesis in Basidiomycete fungi
por: Risa Nofiani, et al.
Publicado: (2018) -
BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing
por: Chun Hang Au, et al.
Publicado: (2017) -
Molecular Diversity and Potential Anti-neuroinflammatory Activities of Cyathane Diterpenoids from the Basidiomycete Cyathus africanus
por: Jing Wei, et al.
Publicado: (2017) -
Elucidating the Beta-Diversity of the Microbiome: from Global Alignment to Local Alignment
por: Xiaoquan Su
Publicado: (2021) -
Tasting soil fungal diversity with earth tongues: phylogenetic test of SATé alignments for environmental ITS data.
por: Zheng Wang, et al.
Publicado: (2011)