Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

The increasing accessibility of single cell omics technologies beyond transcriptomics demands parallel advances in analysis. Here, the authors introduce STREAM, a pipeline for reconstruction and visualization of differentiation trajectories from both single-cell RNA-seq and ATAC-seq data.

Guardado en:

Detalles Bibliográficos
Autores principales:	Huidong Chen, Luca Albergante, Jonathan Y. Hsu, Caleb A. Lareau, Giosuè Lo Bosco, Jihong Guan, Shuigeng Zhou, Alexander N. Gorban, Daniel E. Bauer, Martin J. Aryee, David M. Langenau, Andrei Zinovyev, Jason D. Buenrostro, Guo-Cheng Yuan, Luca Pinello
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2019
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/a8fc084be2f940a8842ac27783508d69
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

id	oai:doaj.org-article:a8fc084be2f940a8842ac27783508d69
record_format	dspace
spelling	oai:doaj.org-article:a8fc084be2f940a8842ac27783508d692021-12-02T17:01:28ZSingle-cell trajectories reconstruction, exploration and mapping of omics data with STREAM10.1038/s41467-019-09670-42041-1723https://doaj.org/article/a8fc084be2f940a8842ac27783508d692019-04-01T00:00:00Zhttps://doi.org/10.1038/s41467-019-09670-4https://doaj.org/toc/2041-1723The increasing accessibility of single cell omics technologies beyond transcriptomics demands parallel advances in analysis. Here, the authors introduce STREAM, a pipeline for reconstruction and visualization of differentiation trajectories from both single-cell RNA-seq and ATAC-seq data.Huidong ChenLuca AlberganteJonathan Y. HsuCaleb A. LareauGiosuè Lo BoscoJihong GuanShuigeng ZhouAlexander N. GorbanDaniel E. BauerMartin J. AryeeDavid M. LangenauAndrei ZinovyevJason D. BuenrostroGuo-Cheng YuanLuca PinelloNature PortfolioarticleScienceQENNature Communications, Vol 10, Iss 1, Pp 1-14 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Huidong Chen Luca Albergante Jonathan Y. Hsu Caleb A. Lareau Giosuè Lo Bosco Jihong Guan Shuigeng Zhou Alexander N. Gorban Daniel E. Bauer Martin J. Aryee David M. Langenau Andrei Zinovyev Jason D. Buenrostro Guo-Cheng Yuan Luca Pinello Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
description	The increasing accessibility of single cell omics technologies beyond transcriptomics demands parallel advances in analysis. Here, the authors introduce STREAM, a pipeline for reconstruction and visualization of differentiation trajectories from both single-cell RNA-seq and ATAC-seq data.
format	article
author	Huidong Chen Luca Albergante Jonathan Y. Hsu Caleb A. Lareau Giosuè Lo Bosco Jihong Guan Shuigeng Zhou Alexander N. Gorban Daniel E. Bauer Martin J. Aryee David M. Langenau Andrei Zinovyev Jason D. Buenrostro Guo-Cheng Yuan Luca Pinello
author_facet	Huidong Chen Luca Albergante Jonathan Y. Hsu Caleb A. Lareau Giosuè Lo Bosco Jihong Guan Shuigeng Zhou Alexander N. Gorban Daniel E. Bauer Martin J. Aryee David M. Langenau Andrei Zinovyev Jason D. Buenrostro Guo-Cheng Yuan Luca Pinello
author_sort	Huidong Chen
title	Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
title_short	Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
title_full	Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
title_fullStr	Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
title_full_unstemmed	Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
title_sort	single-cell trajectories reconstruction, exploration and mapping of omics data with stream
publisher	Nature Portfolio
publishDate	2019
url	https://doaj.org/article/a8fc084be2f940a8842ac27783508d69
work_keys_str_mv	AT huidongchen singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT lucaalbergante singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT jonathanyhsu singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT calebalareau singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT giosuelobosco singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT jihongguan singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT shuigengzhou singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT alexanderngorban singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT danielebauer singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT martinjaryee singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT davidmlangenau singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT andreizinovyev singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT jasondbuenrostro singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT guochengyuan singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream AT lucapinello singlecelltrajectoriesreconstructionexplorationandmappingofomicsdatawithstream
_version_	1718382166392438784

Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

Ejemplares similares