Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia

Missa H, Susilowati A, Setyaningsih R. 2016. Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia, Indonesia. Biodiversitas 17: 614-619. There are three types of cattle farms with different kinds of feed...

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Autores principales:	HILDEGARDIS MISSA, ARI SUSILOWATI, RATNA SETYANINGSIH
Formato:	article
Lenguaje:	EN
Publicado:	MBI & UNS Solo 2016
Materias:	16s rrna encoding gene, bali cattle, bos sondaicus, cellulolytic bacteria, diversity, phylogenetic relationship Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/ab851e51b9694af1b4f9193563e9b12f
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spelling	oai:doaj.org-article:ab851e51b9694af1b4f9193563e9b12f2021-11-14T02:27:09ZDiversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia1412-033X2085-472210.13057/biodiv/d170232https://doaj.org/article/ab851e51b9694af1b4f9193563e9b12f2016-07-01T00:00:00Zhttps://smujo.id/biodiv/article/view/335https://doaj.org/toc/1412-033Xhttps://doaj.org/toc/2085-4722Missa H, Susilowati A, Setyaningsih R. 2016. Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia, Indonesia. Biodiversitas 17: 614-619. There are three types of cattle farms with different kinds of feed in South Central Timor, that are maintained around Supul Lake, quarantined and left in the wild. This research aims to isolate, identify and determine the genetic relationship among of cellulolytic bacteria from the feces of Bali Cattle (Bos javanicus javanicus DÂ´Alton, 1823, syn. Bos javanicus sondaicus Temminck, 1839/Blyth, 1842) in South Central Timor. The isolation of cellulolytic bacteria was done by using spread plate method on Carboxymethyl Cellulose (CMC) media. Cellulolytic activities were determined by the clear zone visibility using 0.1% congo red indicator. 16S rRNA encoding genes amplification was conducted using Polymerase Chain Reaction (PCR) using 63F and 1387r primers. Sequences of the 16S rRNA encoding genes were analyzed by bioinformatics using Nucleotide BLAST on NCBI website to determine the species of bacteria based on sequence similarity. The construction of the phylogenetic tree of cellulolytic bacteria was done using MEGA 7.0 software. The results were 48 isolates showing cellulase activity. There were 12 isolates from Supul Lake which have high cellulase activity namely: S1H6, S2H5 S2H7 S3H; in quarantine location: K1H6, K2H3, L2H7, K2H4, K1H2, K3H2; and in wild care system: L1H4 and L1H5. These activities were presented in clear zone about 7.08 to 1.47 cm. Based on the analysis of 16S rRNA encoding genes, there were 5 different genera found in 12 isolates with high cellulolytic activity. The isolates possessed similarity with Pseudomonas sp. 96%, Acinetobacter sp. 95%, Bacillus 97%, Stenotrophomonas 88%, and Brachybacterium sp. 97%. There were seven bacterial isolates having the potential to be declared as new bacterial species with <97% similarity percentage that are SIH6, S2H5, K2H3, K2H4, LIH4, LIH5, L2H7. Based on the phylogenetic tree cellulolytic bacteria showed the closest genetic relationship of 0.0% and farthest of 19.3% L2H7 isolate with Brachybacterium sp. S21F1HILDEGARDIS MISSAARI SUSILOWATIRATNA SETYANINGSIHMBI & UNS Soloarticle16s rrna encoding gene, bali cattle, bos sondaicus, cellulolytic bacteria, diversity, phylogenetic relationshipBiology (General)QH301-705.5ENBiodiversitas, Vol 17, Iss 2 (2016)
institution	DOAJ
collection	DOAJ
language	EN
topic	16s rrna encoding gene, bali cattle, bos sondaicus, cellulolytic bacteria, diversity, phylogenetic relationship Biology (General) QH301-705.5
spellingShingle	16s rrna encoding gene, bali cattle, bos sondaicus, cellulolytic bacteria, diversity, phylogenetic relationship Biology (General) QH301-705.5 HILDEGARDIS MISSA ARI SUSILOWATI RATNA SETYANINGSIH Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia
description	Missa H, Susilowati A, Setyaningsih R. 2016. Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia, Indonesia. Biodiversitas 17: 614-619. There are three types of cattle farms with different kinds of feed in South Central Timor, that are maintained around Supul Lake, quarantined and left in the wild. This research aims to isolate, identify and determine the genetic relationship among of cellulolytic bacteria from the feces of Bali Cattle (Bos javanicus javanicus DÂ´Alton, 1823, syn. Bos javanicus sondaicus Temminck, 1839/Blyth, 1842) in South Central Timor. The isolation of cellulolytic bacteria was done by using spread plate method on Carboxymethyl Cellulose (CMC) media. Cellulolytic activities were determined by the clear zone visibility using 0.1% congo red indicator. 16S rRNA encoding genes amplification was conducted using Polymerase Chain Reaction (PCR) using 63F and 1387r primers. Sequences of the 16S rRNA encoding genes were analyzed by bioinformatics using Nucleotide BLAST on NCBI website to determine the species of bacteria based on sequence similarity. The construction of the phylogenetic tree of cellulolytic bacteria was done using MEGA 7.0 software. The results were 48 isolates showing cellulase activity. There were 12 isolates from Supul Lake which have high cellulase activity namely: S1H6, S2H5 S2H7 S3H; in quarantine location: K1H6, K2H3, L2H7, K2H4, K1H2, K3H2; and in wild care system: L1H4 and L1H5. These activities were presented in clear zone about 7.08 to 1.47 cm. Based on the analysis of 16S rRNA encoding genes, there were 5 different genera found in 12 isolates with high cellulolytic activity. The isolates possessed similarity with Pseudomonas sp. 96%, Acinetobacter sp. 95%, Bacillus 97%, Stenotrophomonas 88%, and Brachybacterium sp. 97%. There were seven bacterial isolates having the potential to be declared as new bacterial species with <97% similarity percentage that are SIH6, S2H5, K2H3, K2H4, LIH4, LIH5, L2H7. Based on the phylogenetic tree cellulolytic bacteria showed the closest genetic relationship of 0.0% and farthest of 19.3% L2H7 isolate with Brachybacterium sp. S21F1
format	article
author	HILDEGARDIS MISSA ARI SUSILOWATI RATNA SETYANINGSIH
author_facet	HILDEGARDIS MISSA ARI SUSILOWATI RATNA SETYANINGSIH
author_sort	HILDEGARDIS MISSA
title	Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia
title_short	Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia
title_full	Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia
title_fullStr	Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia
title_full_unstemmed	Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia
title_sort	diversity and phylogenetic relationship of cellulolytic bacteria from the feces of bali cattle in south central timor, east nusa tenggara, indonesia
publisher	MBI & UNS Solo
publishDate	2016
url	https://doaj.org/article/ab851e51b9694af1b4f9193563e9b12f
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Diversity and phylogenetic relationship of cellulolytic bacteria from the feces of Bali Cattle in South Central Timor, East Nusa Tenggara, Indonesia

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