Fish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene

The mtDNA sequences revealed that several of the fish studied were Hampala macrolepidota and Barbonymus gonionotus. The objective of this research was to learn the pattern of COI gene in mtDNA and establish a phylogenetic tree. Basic Local Alignment Search Tool-nucleotide (BLASTn) confirmed that Bar...

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Autor principal:	Wulandari Tuah N. M.
Formato:	article
Lenguaje:	EN FR
Publicado:	EDP Sciences 2021
Materias:	Environmental sciences GE1-350
Acceso en línea:	https://doaj.org/article/acf7bb9452b84a04bce69600161ccea4
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spelling	oai:doaj.org-article:acf7bb9452b84a04bce69600161ccea42021-11-12T11:44:43ZFish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene2267-124210.1051/e3sconf/202132201038https://doaj.org/article/acf7bb9452b84a04bce69600161ccea42021-01-01T00:00:00Zhttps://www.e3s-conferences.org/articles/e3sconf/pdf/2021/98/e3sconf_isffs2021_01038.pdfhttps://doaj.org/toc/2267-1242The mtDNA sequences revealed that several of the fish studied were Hampala macrolepidota and Barbonymus gonionotus. The objective of this research was to learn the pattern of COI gene in mtDNA and establish a phylogenetic tree. Basic Local Alignment Search Tool-nucleotide (BLASTn) confirmed that Barbonymus gonionotus froma the Ranau Lake, South Sumatera has 100% matching ranges to the species from Memberamo River (Indonesia), India, Bangladesh, Thailand (Mae Khlong), Indo-Myanmar, and Malaysia_1. The lowest closeness (98.76%) is related to species from Thailand (Lower Ing). The Blast investigation appears us that the level of familiarity was very high, it is coming to 98-100% in Barbonymus gonionotus. Hampala macrolepidota had 100% matching ranges to the species from Indonesia (SouthaSumatera_1) and Vietnam. They had 99.05%-99.84% closeness from Malaysia_1,2&3, Indonesia (South Sumatera_2&3, Java and Bali_1,2&3).Wulandari Tuah N. M.EDP SciencesarticleEnvironmental sciencesGE1-350ENFRE3S Web of Conferences, Vol 322, p 01038 (2021)
institution	DOAJ
collection	DOAJ
language	EN FR
topic	Environmental sciences GE1-350
spellingShingle	Environmental sciences GE1-350 Wulandari Tuah N. M. Fish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene
description	The mtDNA sequences revealed that several of the fish studied were Hampala macrolepidota and Barbonymus gonionotus. The objective of this research was to learn the pattern of COI gene in mtDNA and establish a phylogenetic tree. Basic Local Alignment Search Tool-nucleotide (BLASTn) confirmed that Barbonymus gonionotus froma the Ranau Lake, South Sumatera has 100% matching ranges to the species from Memberamo River (Indonesia), India, Bangladesh, Thailand (Mae Khlong), Indo-Myanmar, and Malaysia_1. The lowest closeness (98.76%) is related to species from Thailand (Lower Ing). The Blast investigation appears us that the level of familiarity was very high, it is coming to 98-100% in Barbonymus gonionotus. Hampala macrolepidota had 100% matching ranges to the species from Indonesia (SouthaSumatera_1) and Vietnam. They had 99.05%-99.84% closeness from Malaysia_1,2&3, Indonesia (South Sumatera_2&3, Java and Bali_1,2&3).
format	article
author	Wulandari Tuah N. M.
author_facet	Wulandari Tuah N. M.
author_sort	Wulandari Tuah N. M.
title	Fish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene
title_short	Fish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene
title_full	Fish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene
title_fullStr	Fish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene
title_full_unstemmed	Fish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene
title_sort	fish identification based on partial fragments of the mitochondrial coi subunit i gene
publisher	EDP Sciences
publishDate	2021
url	https://doaj.org/article/acf7bb9452b84a04bce69600161ccea4
work_keys_str_mv	AT wulandarituahnm fishidentificationbasedonpartialfragmentsofthemitochondrialcoisubunitigene
_version_	1718430572167036928

Fish Identification based on Partial Fragments of The Mitochondrial COI Subunit I Gene

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