High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

Long-read sequencing technologies facilitate efficient and high quality genome assembly. Here Michael et al. achieve a fast reference assembly for Arabidopsis thaliana KBS-Mac-74 accession using the handheld Oxford Nanopore MinION sequencer and consumer computing hardware, and demonstrate its useful...

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Autores principales:	Todd P. Michael, Florian Jupe, Felix Bemm, S. Timothy Motley, Justin P. Sandoval, Christa Lanz, Olivier Loudet, Detlef Weigel, Joseph R. Ecker
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2018
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/ad6bc43df0404861ae63cd85f221e0b0
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spelling	oai:doaj.org-article:ad6bc43df0404861ae63cd85f221e0b02021-12-02T14:40:09ZHigh contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell10.1038/s41467-018-03016-22041-1723https://doaj.org/article/ad6bc43df0404861ae63cd85f221e0b02018-02-01T00:00:00Zhttps://doi.org/10.1038/s41467-018-03016-2https://doaj.org/toc/2041-1723Long-read sequencing technologies facilitate efficient and high quality genome assembly. Here Michael et al. achieve a fast reference assembly for Arabidopsis thaliana KBS-Mac-74 accession using the handheld Oxford Nanopore MinION sequencer and consumer computing hardware, and demonstrate its usefulness in resolving complex structural variation.Todd P. MichaelFlorian JupeFelix BemmS. Timothy MotleyJustin P. SandovalChrista LanzOlivier LoudetDetlef WeigelJoseph R. EckerNature PortfolioarticleScienceQENNature Communications, Vol 9, Iss 1, Pp 1-8 (2018)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Todd P. Michael Florian Jupe Felix Bemm S. Timothy Motley Justin P. Sandoval Christa Lanz Olivier Loudet Detlef Weigel Joseph R. Ecker High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
description	Long-read sequencing technologies facilitate efficient and high quality genome assembly. Here Michael et al. achieve a fast reference assembly for Arabidopsis thaliana KBS-Mac-74 accession using the handheld Oxford Nanopore MinION sequencer and consumer computing hardware, and demonstrate its usefulness in resolving complex structural variation.
format	article
author	Todd P. Michael Florian Jupe Felix Bemm S. Timothy Motley Justin P. Sandoval Christa Lanz Olivier Loudet Detlef Weigel Joseph R. Ecker
author_facet	Todd P. Michael Florian Jupe Felix Bemm S. Timothy Motley Justin P. Sandoval Christa Lanz Olivier Loudet Detlef Weigel Joseph R. Ecker
author_sort	Todd P. Michael
title	High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
title_short	High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
title_full	High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
title_fullStr	High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
title_full_unstemmed	High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
title_sort	high contiguity arabidopsis thaliana genome assembly with a single nanopore flow cell
publisher	Nature Portfolio
publishDate	2018
url	https://doaj.org/article/ad6bc43df0404861ae63cd85f221e0b0
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High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

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