Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota

The frequent use of chemical fertiliser produces harmful effects on the soil ecosystem. Therefore, biocompatible methods are used to improve plant health and production through natural fertiliser or plant beneficial microorganisms. This study aims to investigate the effect of amended chicken manure-...

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Autores principales:	Haq Hafeez Ul, Li Ye, Jin Lingyue, Zhang Ting, Cheng Linjie, Li Zhe, Tian Baoyu
Formato:	article
Lenguaje:	EN
Publicado:	Sciendo 2021
Materias:	manure addition endosphere microbiome 16s rrna gene amplicon sequencing tomato Agriculture S
Acceso en línea:	https://doaj.org/article/adb0fa755a2a41c58aee54beb7db4ea2
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id	oai:doaj.org-article:adb0fa755a2a41c58aee54beb7db4ea2
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spelling	oai:doaj.org-article:adb0fa755a2a41c58aee54beb7db4ea22021-12-05T14:11:05ZEffect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota1338-437610.2478/agri-2021-0013https://doaj.org/article/adb0fa755a2a41c58aee54beb7db4ea22021-10-01T00:00:00Zhttps://doi.org/10.2478/agri-2021-0013https://doaj.org/toc/1338-4376The frequent use of chemical fertiliser produces harmful effects on the soil ecosystem. Therefore, biocompatible methods are used to improve plant health and production through natural fertiliser or plant beneficial microorganisms. This study aims to investigate the effect of amended chicken manure-based natural fertiliser on bacterial communities and plant beneficial bacteria of tomato endosphere microbiome using the high throughput 16S rRNA gene amplicon sequencing. The results showed Proteobacteria (89.4 ± 4.7% to 86.7 ± 3.9%), Actinobacteria (6.03 ± 2.9% to 3.56 ± 2.1%), and Firmicutes (3.34 ± 1.3% to 0.59 ± 0.3%) as the dominant bacterial phyla of tomato endophytic microbiome. Pseudomonas and Bacillus were the most abundant identifiable genera in the chicken manure root (CMR) (amended manure treatments) sample. There was no significant difference in alpha bacterial diversity (Shannon index: p = 0.48) and species richness (Chao 1: p = 0.43) between control original root (OR) and CMR. However, the distribution of the dominant phyla was mainly affected by manure fertilisation. The non-metric multidimensional scaling (NMDS) and PCoA of beta diversity analysis suggested a significant separation in bacterial communities of tomato endophytes between CMR and OR. The most differently abundant bacterial taxa belong to Bacteroidetes in the OR group, whereas the beneficial bacterial communities of Actinobacteria and Firmicutes were more abundant in the CMR group. Therefore, the chicken manure application can significantly affect bacterial communities of tomatoes´ root endophytic microbiome and effectively improve the abundance of the beneficial microbes as biofertilisers.Haq Hafeez UlLi YeJin LingyueZhang TingCheng LinjieLi ZheTian BaoyuSciendoarticlemanure additionendosphere microbiome16s rrna gene amplicon sequencingtomatoAgricultureSENAgriculture, Vol 67, Iss 3, Pp 144-154 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	manure addition endosphere microbiome 16s rrna gene amplicon sequencing tomato Agriculture S
spellingShingle	manure addition endosphere microbiome 16s rrna gene amplicon sequencing tomato Agriculture S Haq Hafeez Ul Li Ye Jin Lingyue Zhang Ting Cheng Linjie Li Zhe Tian Baoyu Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota
description	The frequent use of chemical fertiliser produces harmful effects on the soil ecosystem. Therefore, biocompatible methods are used to improve plant health and production through natural fertiliser or plant beneficial microorganisms. This study aims to investigate the effect of amended chicken manure-based natural fertiliser on bacterial communities and plant beneficial bacteria of tomato endosphere microbiome using the high throughput 16S rRNA gene amplicon sequencing. The results showed Proteobacteria (89.4 ± 4.7% to 86.7 ± 3.9%), Actinobacteria (6.03 ± 2.9% to 3.56 ± 2.1%), and Firmicutes (3.34 ± 1.3% to 0.59 ± 0.3%) as the dominant bacterial phyla of tomato endophytic microbiome. Pseudomonas and Bacillus were the most abundant identifiable genera in the chicken manure root (CMR) (amended manure treatments) sample. There was no significant difference in alpha bacterial diversity (Shannon index: p = 0.48) and species richness (Chao 1: p = 0.43) between control original root (OR) and CMR. However, the distribution of the dominant phyla was mainly affected by manure fertilisation. The non-metric multidimensional scaling (NMDS) and PCoA of beta diversity analysis suggested a significant separation in bacterial communities of tomato endophytes between CMR and OR. The most differently abundant bacterial taxa belong to Bacteroidetes in the OR group, whereas the beneficial bacterial communities of Actinobacteria and Firmicutes were more abundant in the CMR group. Therefore, the chicken manure application can significantly affect bacterial communities of tomatoes´ root endophytic microbiome and effectively improve the abundance of the beneficial microbes as biofertilisers.
format	article
author	Haq Hafeez Ul Li Ye Jin Lingyue Zhang Ting Cheng Linjie Li Zhe Tian Baoyu
author_facet	Haq Hafeez Ul Li Ye Jin Lingyue Zhang Ting Cheng Linjie Li Zhe Tian Baoyu
author_sort	Haq Hafeez Ul
title	Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota
title_short	Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota
title_full	Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota
title_fullStr	Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota
title_full_unstemmed	Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota
title_sort	effect of chicken manure-based fertiliser on bacterial communities and diversity of tomato endosphere microbiota
publisher	Sciendo
publishDate	2021
url	https://doaj.org/article/adb0fa755a2a41c58aee54beb7db4ea2
work_keys_str_mv	AT haqhafeezul effectofchickenmanurebasedfertiliseronbacterialcommunitiesanddiversityoftomatoendospheremicrobiota AT liye effectofchickenmanurebasedfertiliseronbacterialcommunitiesanddiversityoftomatoendospheremicrobiota AT jinlingyue effectofchickenmanurebasedfertiliseronbacterialcommunitiesanddiversityoftomatoendospheremicrobiota AT zhangting effectofchickenmanurebasedfertiliseronbacterialcommunitiesanddiversityoftomatoendospheremicrobiota AT chenglinjie effectofchickenmanurebasedfertiliseronbacterialcommunitiesanddiversityoftomatoendospheremicrobiota AT lizhe effectofchickenmanurebasedfertiliseronbacterialcommunitiesanddiversityoftomatoendospheremicrobiota AT tianbaoyu effectofchickenmanurebasedfertiliseronbacterialcommunitiesanddiversityoftomatoendospheremicrobiota
_version_	1718371440119513088

Effect of Chicken Manure-Based Fertiliser on Bacterial Communities and Diversity of Tomato Endosphere Microbiota

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