A dynamical framework for complex fractional killing
Abstract When chemotherapy drugs are applied to tumor cells with the same or similar genotypes, some cells are killed, while others survive. This fractional killing contributes to drug resistance in cancer. Through an incoherent feedforward loop, chemotherapy drugs not only activate p53 to induce ce...
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Nature Portfolio
2017
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oai:doaj.org-article:ae89e0aee4dd4bcc96569fe1115175e62021-12-02T11:52:20ZA dynamical framework for complex fractional killing10.1038/s41598-017-07422-22045-2322https://doaj.org/article/ae89e0aee4dd4bcc96569fe1115175e62017-08-01T00:00:00Zhttps://doi.org/10.1038/s41598-017-07422-2https://doaj.org/toc/2045-2322Abstract When chemotherapy drugs are applied to tumor cells with the same or similar genotypes, some cells are killed, while others survive. This fractional killing contributes to drug resistance in cancer. Through an incoherent feedforward loop, chemotherapy drugs not only activate p53 to induce cell death, but also promote the expression of apoptosis inhibitors which inhibit cell death. Consequently, cells in which p53 is activated early undergo apoptosis while cells in which p53 is activated late survive. The incoherent feedforward loop and the essential role of p53 activation timing makes fractional killing a complex dynamical challenge, which is hard to understand with intuition alone. To better understand this process, we have constructed a representative model by integrating the control of apoptosis with the relevant signaling pathways. After the model was trained to recapture the observed properties of fractional killing, it was analyzed with nonlinear dynamical tools. The analysis suggested a simple dynamical framework for fractional killing, which predicts that cell fate can be altered in three possible ways: alteration of bifurcation geometry, alteration of cell trajectories, or both. These predicted categories can explain existing strategies known to combat fractional killing and facilitate the design of novel strategies.Richard BallwegAndrew L. PaekTongli ZhangNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 7, Iss 1, Pp 1-12 (2017) |
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Medicine R Science Q Richard Ballweg Andrew L. Paek Tongli Zhang A dynamical framework for complex fractional killing |
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Abstract When chemotherapy drugs are applied to tumor cells with the same or similar genotypes, some cells are killed, while others survive. This fractional killing contributes to drug resistance in cancer. Through an incoherent feedforward loop, chemotherapy drugs not only activate p53 to induce cell death, but also promote the expression of apoptosis inhibitors which inhibit cell death. Consequently, cells in which p53 is activated early undergo apoptosis while cells in which p53 is activated late survive. The incoherent feedforward loop and the essential role of p53 activation timing makes fractional killing a complex dynamical challenge, which is hard to understand with intuition alone. To better understand this process, we have constructed a representative model by integrating the control of apoptosis with the relevant signaling pathways. After the model was trained to recapture the observed properties of fractional killing, it was analyzed with nonlinear dynamical tools. The analysis suggested a simple dynamical framework for fractional killing, which predicts that cell fate can be altered in three possible ways: alteration of bifurcation geometry, alteration of cell trajectories, or both. These predicted categories can explain existing strategies known to combat fractional killing and facilitate the design of novel strategies. |
format |
article |
author |
Richard Ballweg Andrew L. Paek Tongli Zhang |
author_facet |
Richard Ballweg Andrew L. Paek Tongli Zhang |
author_sort |
Richard Ballweg |
title |
A dynamical framework for complex fractional killing |
title_short |
A dynamical framework for complex fractional killing |
title_full |
A dynamical framework for complex fractional killing |
title_fullStr |
A dynamical framework for complex fractional killing |
title_full_unstemmed |
A dynamical framework for complex fractional killing |
title_sort |
dynamical framework for complex fractional killing |
publisher |
Nature Portfolio |
publishDate |
2017 |
url |
https://doaj.org/article/ae89e0aee4dd4bcc96569fe1115175e6 |
work_keys_str_mv |
AT richardballweg adynamicalframeworkforcomplexfractionalkilling AT andrewlpaek adynamicalframeworkforcomplexfractionalkilling AT tonglizhang adynamicalframeworkforcomplexfractionalkilling AT richardballweg dynamicalframeworkforcomplexfractionalkilling AT andrewlpaek dynamicalframeworkforcomplexfractionalkilling AT tonglizhang dynamicalframeworkforcomplexfractionalkilling |
_version_ |
1718395125253537792 |