Genome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>

The MADS-box family gene is a class of transcription factors that have been extensively studied and involved in several plant growth and development processes, especially in floral organ specificity, flowering time and initiation and fruit development. In this study, we identified 69 candidate MADS-...

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Autores principales:	Qianqian Zhang, Sijia Hou, Zhenmei Sun, Jing Chen, Jianqiao Meng, Dan Liang, Rongling Wu, Yunqian Guo
Formato:	article
Lenguaje:	EN
Publicado:	MDPI AG 2021
Materias:	MADS-box transcription factors <i>Theobroma cacao</i> bioinformatics analysis genome-wide characterization gene family Genetics QH426-470
Acceso en línea:	https://doaj.org/article/af58478c2bc9445ca90c38bc6ff591cb
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spelling	oai:doaj.org-article:af58478c2bc9445ca90c38bc6ff591cb2021-11-25T17:42:07ZGenome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>10.3390/genes121117992073-4425https://doaj.org/article/af58478c2bc9445ca90c38bc6ff591cb2021-11-01T00:00:00Zhttps://www.mdpi.com/2073-4425/12/11/1799https://doaj.org/toc/2073-4425The MADS-box family gene is a class of transcription factors that have been extensively studied and involved in several plant growth and development processes, especially in floral organ specificity, flowering time and initiation and fruit development. In this study, we identified 69 candidate MADS-box genes and clustered these genes into five subgroups (Mα: 11; Mβ: 2; Mγ: 14; Mδ: 9; MIKC: 32) based on their phylogenetical relationships with <i>Arabidopsis</i>. Most <i>TcMADS</i> genes within the same subgroup showed a similar gene structure and highly conserved motifs. Chromosomal distribution analysis revealed that all the <i>TcMADS</i> genes were evenly distributed in 10 chromosomes. Additionally, the cis-acting elements of promoter, physicochemical properties and subcellular localization were also analyzed. This study provides a comprehensive analysis of MADS-box genes in <i>Theobroma cacao</i> and lays the foundation for further functional research.Qianqian ZhangSijia HouZhenmei SunJing ChenJianqiao MengDan LiangRongling WuYunqian GuoMDPI AGarticleMADS-box transcription factors<i>Theobroma cacao</i>bioinformatics analysisgenome-wide characterizationgene familyGeneticsQH426-470ENGenes, Vol 12, Iss 1799, p 1799 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	MADS-box transcription factors <i>Theobroma cacao</i> bioinformatics analysis genome-wide characterization gene family Genetics QH426-470
spellingShingle	MADS-box transcription factors <i>Theobroma cacao</i> bioinformatics analysis genome-wide characterization gene family Genetics QH426-470 Qianqian Zhang Sijia Hou Zhenmei Sun Jing Chen Jianqiao Meng Dan Liang Rongling Wu Yunqian Guo Genome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>
description	The MADS-box family gene is a class of transcription factors that have been extensively studied and involved in several plant growth and development processes, especially in floral organ specificity, flowering time and initiation and fruit development. In this study, we identified 69 candidate MADS-box genes and clustered these genes into five subgroups (Mα: 11; Mβ: 2; Mγ: 14; Mδ: 9; MIKC: 32) based on their phylogenetical relationships with <i>Arabidopsis</i>. Most <i>TcMADS</i> genes within the same subgroup showed a similar gene structure and highly conserved motifs. Chromosomal distribution analysis revealed that all the <i>TcMADS</i> genes were evenly distributed in 10 chromosomes. Additionally, the cis-acting elements of promoter, physicochemical properties and subcellular localization were also analyzed. This study provides a comprehensive analysis of MADS-box genes in <i>Theobroma cacao</i> and lays the foundation for further functional research.
format	article
author	Qianqian Zhang Sijia Hou Zhenmei Sun Jing Chen Jianqiao Meng Dan Liang Rongling Wu Yunqian Guo
author_facet	Qianqian Zhang Sijia Hou Zhenmei Sun Jing Chen Jianqiao Meng Dan Liang Rongling Wu Yunqian Guo
author_sort	Qianqian Zhang
title	Genome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>
title_short	Genome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>
title_full	Genome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>
title_fullStr	Genome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>
title_full_unstemmed	Genome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>
title_sort	genome-wide identification and analysis of the mads-box gene family in <i>theobroma cacao</i>
publisher	MDPI AG
publishDate	2021
url	https://doaj.org/article/af58478c2bc9445ca90c38bc6ff591cb
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Genome-Wide Identification and Analysis of the MADS-Box Gene Family in <i>Theobroma cacao</i>

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