Optimal compressed representation of high throughput sequence data via light assembly

Increase in high throughput sequencing (HTS) data warrants compression methods to facilitate better storage and communication. Here, Ginart et al. introduce Assembltrie, a reference-free compression tool which is guaranteed to achieve optimality for error-free reads.

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Autores principales:	Antonio A. Ginart, Joseph Hui, Kaiyuan Zhu, Ibrahim Numanagić, Thomas A. Courtade, S. Cenk Sahinalp, David N. Tse
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2018
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/b186eeb7b1ee4de1983ef5679b01c1db
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spelling	oai:doaj.org-article:b186eeb7b1ee4de1983ef5679b01c1db2021-12-02T17:32:02ZOptimal compressed representation of high throughput sequence data via light assembly10.1038/s41467-017-02480-62041-1723https://doaj.org/article/b186eeb7b1ee4de1983ef5679b01c1db2018-02-01T00:00:00Zhttps://doi.org/10.1038/s41467-017-02480-6https://doaj.org/toc/2041-1723Increase in high throughput sequencing (HTS) data warrants compression methods to facilitate better storage and communication. Here, Ginart et al. introduce Assembltrie, a reference-free compression tool which is guaranteed to achieve optimality for error-free reads.Antonio A. GinartJoseph HuiKaiyuan ZhuIbrahim NumanagićThomas A. CourtadeS. Cenk SahinalpDavid N. TseNature PortfolioarticleScienceQENNature Communications, Vol 9, Iss 1, Pp 1-9 (2018)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Antonio A. Ginart Joseph Hui Kaiyuan Zhu Ibrahim Numanagić Thomas A. Courtade S. Cenk Sahinalp David N. Tse Optimal compressed representation of high throughput sequence data via light assembly
description	Increase in high throughput sequencing (HTS) data warrants compression methods to facilitate better storage and communication. Here, Ginart et al. introduce Assembltrie, a reference-free compression tool which is guaranteed to achieve optimality for error-free reads.
format	article
author	Antonio A. Ginart Joseph Hui Kaiyuan Zhu Ibrahim Numanagić Thomas A. Courtade S. Cenk Sahinalp David N. Tse
author_facet	Antonio A. Ginart Joseph Hui Kaiyuan Zhu Ibrahim Numanagić Thomas A. Courtade S. Cenk Sahinalp David N. Tse
author_sort	Antonio A. Ginart
title	Optimal compressed representation of high throughput sequence data via light assembly
title_short	Optimal compressed representation of high throughput sequence data via light assembly
title_full	Optimal compressed representation of high throughput sequence data via light assembly
title_fullStr	Optimal compressed representation of high throughput sequence data via light assembly
title_full_unstemmed	Optimal compressed representation of high throughput sequence data via light assembly
title_sort	optimal compressed representation of high throughput sequence data via light assembly
publisher	Nature Portfolio
publishDate	2018
url	https://doaj.org/article/b186eeb7b1ee4de1983ef5679b01c1db
work_keys_str_mv	AT antonioaginart optimalcompressedrepresentationofhighthroughputsequencedatavialightassembly AT josephhui optimalcompressedrepresentationofhighthroughputsequencedatavialightassembly AT kaiyuanzhu optimalcompressedrepresentationofhighthroughputsequencedatavialightassembly AT ibrahimnumanagic optimalcompressedrepresentationofhighthroughputsequencedatavialightassembly AT thomasacourtade optimalcompressedrepresentationofhighthroughputsequencedatavialightassembly AT scenksahinalp optimalcompressedrepresentationofhighthroughputsequencedatavialightassembly AT davidntse optimalcompressedrepresentationofhighthroughputsequencedatavialightassembly
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Optimal compressed representation of high throughput sequence data via light assembly

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