Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D

Phages have seriously affected the biochemical systems of the world, and not only are phages related to our health, but medical treatments for many cancers and skin infections are related to phages; therefore, this paper sought to identify phage proteins. In this paper, a Pseudo-188D model was estab...

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Autores principales:	Xiaomei Gu, Lina Guo, Bo Liao, Qinghua Jiang
Formato:	article
Lenguaje:	EN
Publicado:	Frontiers Media S.A. 2021
Materias:	model pseudo-188D phage stochastic gradient descent dimensional disaster digital characteristics Genetics QH426-470
Acceso en línea:	https://doaj.org/article/b21d9d0d18af439296eaad48107c46ea
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spelling	oai:doaj.org-article:b21d9d0d18af439296eaad48107c46ea2021-12-02T00:10:47ZPseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D1664-802110.3389/fgene.2021.796327https://doaj.org/article/b21d9d0d18af439296eaad48107c46ea2021-12-01T00:00:00Zhttps://www.frontiersin.org/articles/10.3389/fgene.2021.796327/fullhttps://doaj.org/toc/1664-8021Phages have seriously affected the biochemical systems of the world, and not only are phages related to our health, but medical treatments for many cancers and skin infections are related to phages; therefore, this paper sought to identify phage proteins. In this paper, a Pseudo-188D model was established. The digital features of the phage were extracted by PseudoKNC, an appropriate vector was selected by the AdaBoost tool, and features were extracted by 188D. Then, the extracted digital features were combined together, and finally, the viral proteins of the phage were predicted by a stochastic gradient descent algorithm. Our model effect reached 93.4853%. To verify the stability of our model, we randomly selected 80% of the downloaded data to train the model and used the remaining 20% of the data to verify the robustness of our model.Xiaomei GuXiaomei GuXiaomei GuXiaomei GuLina GuoBo LiaoBo LiaoBo LiaoQinghua JiangQinghua JiangQinghua JiangFrontiers Media S.A.articlemodel pseudo-188Dphagestochastic gradient descentdimensional disasterdigital characteristicsGeneticsQH426-470ENFrontiers in Genetics, Vol 12 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	model pseudo-188D phage stochastic gradient descent dimensional disaster digital characteristics Genetics QH426-470
spellingShingle	model pseudo-188D phage stochastic gradient descent dimensional disaster digital characteristics Genetics QH426-470 Xiaomei Gu Xiaomei Gu Xiaomei Gu Xiaomei Gu Lina Guo Bo Liao Bo Liao Bo Liao Qinghua Jiang Qinghua Jiang Qinghua Jiang Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D
description	Phages have seriously affected the biochemical systems of the world, and not only are phages related to our health, but medical treatments for many cancers and skin infections are related to phages; therefore, this paper sought to identify phage proteins. In this paper, a Pseudo-188D model was established. The digital features of the phage were extracted by PseudoKNC, an appropriate vector was selected by the AdaBoost tool, and features were extracted by 188D. Then, the extracted digital features were combined together, and finally, the viral proteins of the phage were predicted by a stochastic gradient descent algorithm. Our model effect reached 93.4853%. To verify the stability of our model, we randomly selected 80% of the downloaded data to train the model and used the remaining 20% of the data to verify the robustness of our model.
format	article
author	Xiaomei Gu Xiaomei Gu Xiaomei Gu Xiaomei Gu Lina Guo Bo Liao Bo Liao Bo Liao Qinghua Jiang Qinghua Jiang Qinghua Jiang
author_facet	Xiaomei Gu Xiaomei Gu Xiaomei Gu Xiaomei Gu Lina Guo Bo Liao Bo Liao Bo Liao Qinghua Jiang Qinghua Jiang Qinghua Jiang
author_sort	Xiaomei Gu
title	Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D
title_short	Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D
title_full	Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D
title_fullStr	Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D
title_full_unstemmed	Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D
title_sort	pseudo-188d: phage protein prediction based on a model of pseudo-188d
publisher	Frontiers Media S.A.
publishDate	2021
url	https://doaj.org/article/b21d9d0d18af439296eaad48107c46ea
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Pseudo-188D: Phage Protein Prediction Based on a Model of Pseudo-188D

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