MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

The identification and accurate quantification of metabolites using electrospray ionization-mass spectrometry (ESI-MS) in hypersaline samples is a challenge due to matrix effects. Clean-up and desalting strategies that typically work well for samples with lower salt concentrations are often ineffec...

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Autores principales:	Chengdong Xu, Sneha P. Couvillion, Ryan L. Sontag, Nancy G. Isern, Yukari Maezato, Stephen R. Lindemann, Taniya Roy Chowdhury, Rui Zhao, Beau R. Morton, Rosalie K. Chu, Ronald J. Moore, Janet K. Jansson, Vanessa L. Bailey, Paula J. Mouser, Margaret F. Romine, James F. Fredrickson, Thomas O. Metz
Formato:	article
Lenguaje:	EN
Publicado:	American Society for Microbiology 2021
Materias:	Microbiology QR1-502
Acceso en línea:	https://doaj.org/article/b231c4471cb8467b96af49d265d004bc
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spelling	oai:doaj.org-article:b231c4471cb8467b96af49d265d004bc2021-12-02T17:22:37ZMetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments2379-507710.1128/mSystems.01058-20https://doaj.org/article/b231c4471cb8467b96af49d265d004bc2021-06-01T00:00:00Zhttps://journals.asm.org/doi/10.1128/mSystems.01058-20https://doaj.org/toc/2379-5077 The identification and accurate quantification of metabolites using electrospray ionization-mass spectrometry (ESI-MS) in hypersaline samples is a challenge due to matrix effects. Clean-up and desalting strategies that typically work well for samples with lower salt concentrations are often ineffective in hypersaline samples.Chengdong XuSneha P. CouvillionRyan L. SontagNancy G. IsernYukari MaezatoStephen R. LindemannTaniya Roy ChowdhuryRui ZhaoBeau R. MortonRosalie K. ChuRonald J. MooreJanet K. JanssonVanessa L. BaileyPaula J. MouserMargaret F. RomineJames F. FredricksonThomas O. MetzAmerican Society for MicrobiologyarticleMicrobiologyQR1-502ENmSystems, Vol 6, Iss 3 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Microbiology QR1-502
spellingShingle	Microbiology QR1-502 Chengdong Xu Sneha P. Couvillion Ryan L. Sontag Nancy G. Isern Yukari Maezato Stephen R. Lindemann Taniya Roy Chowdhury Rui Zhao Beau R. Morton Rosalie K. Chu Ronald J. Moore Janet K. Jansson Vanessa L. Bailey Paula J. Mouser Margaret F. Romine James F. Fredrickson Thomas O. Metz MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments
description	The identification and accurate quantification of metabolites using electrospray ionization-mass spectrometry (ESI-MS) in hypersaline samples is a challenge due to matrix effects. Clean-up and desalting strategies that typically work well for samples with lower salt concentrations are often ineffective in hypersaline samples.
format	article
author	Chengdong Xu Sneha P. Couvillion Ryan L. Sontag Nancy G. Isern Yukari Maezato Stephen R. Lindemann Taniya Roy Chowdhury Rui Zhao Beau R. Morton Rosalie K. Chu Ronald J. Moore Janet K. Jansson Vanessa L. Bailey Paula J. Mouser Margaret F. Romine James F. Fredrickson Thomas O. Metz
author_facet	Chengdong Xu Sneha P. Couvillion Ryan L. Sontag Nancy G. Isern Yukari Maezato Stephen R. Lindemann Taniya Roy Chowdhury Rui Zhao Beau R. Morton Rosalie K. Chu Ronald J. Moore Janet K. Jansson Vanessa L. Bailey Paula J. Mouser Margaret F. Romine James F. Fredrickson Thomas O. Metz
author_sort	Chengdong Xu
title	MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments
title_short	MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments
title_full	MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments
title_fullStr	MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments
title_full_unstemmed	MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments
title_sort	metfish: a metabolomics pipeline for studying microbial communities in chemically extreme environments
publisher	American Society for Microbiology
publishDate	2021
url	https://doaj.org/article/b231c4471cb8467b96af49d265d004bc
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MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

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