Genomic variation across cervid species in respect to the estimation of red deer diversity

The aim of this study was to assess the genetic variations and relationships across evolutionary related cervid species in order to estimate the genetic diversity of the Red deer population that inhabits the forest area in the south-western part of Slovakia. The study was based on the application of...

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Autores principales:	Kasarda Radovan, Moravčíková Nina, Trakovická Anna, Krupová Zuzana, Ondrej Kadlečík
Formato:	article
Lenguaje:	EN
Publicado:	Sciendo 2017
Materias:	deer cross-species genotyping genetic diversity snp Veterinary medicine SF600-1100
Acceso en línea:	https://doaj.org/article/b66db4622a7e48ceb9b6fa25aa40b347
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spelling	oai:doaj.org-article:b66db4622a7e48ceb9b6fa25aa40b3472021-11-17T21:27:51ZGenomic variation across cervid species in respect to the estimation of red deer diversity1820-744810.1515/acve-2017-0005https://doaj.org/article/b66db4622a7e48ceb9b6fa25aa40b3472017-03-01T00:00:00Zhttps://doi.org/10.1515/acve-2017-0005https://doaj.org/toc/1820-7448The aim of this study was to assess the genetic variations and relationships across evolutionary related cervid species in order to estimate the genetic diversity of the Red deer population that inhabits the forest area in the south-western part of Slovakia. The study was based on the application of cross-species SNP genotyping. The genomic data were obtained from a total of 86 individuals representing six genera (Axis, Dama, Cervus, Alces, Rangifer, and Odocoileus) using Illumina BovineSNP50 BeadChip. From 38.85% of successfully genotyped loci up to 1,532 SNPs showed polymorphism and were informative for subsequent analyses of the diversity and interspecific genetic relationships. Generally, a good level of observed heterozygosity was found across all species. The value of FIS (0.23±0.13) signalised the increase of a homozygous proportion within them. The application of molecular variance analysis to the hierarchical population structure showed that most of the variation was conserved within separate species (96%). The performed diversity analysis of Slovak Red deer population and comparative analysis of their phylogenic relationships among subspecies from genus Cervus did not identify a remarkable loss of genetic variability. Also, were not identified any degree of admixture that could be due to the historical background of deer farming in Slovakia or reintroduction and hybridisation by other species from genus Cervus (C. canadensis, and C. nippon) which are the major risk of loss of autochthonous Red deer populations in many areas of Central Europe. The analysis of individual’s ancestry showed consistent results with patterns of evaluated group differentiations which means low migration rates among all species.Kasarda RadovanMoravčíková NinaTrakovická AnnaKrupová ZuzanaOndrej KadlečíkSciendoarticledeercross-species genotypinggenetic diversitysnpVeterinary medicineSF600-1100ENActa Veterinaria, Vol 67, Iss 1, Pp 43-56 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	deer cross-species genotyping genetic diversity snp Veterinary medicine SF600-1100
spellingShingle	deer cross-species genotyping genetic diversity snp Veterinary medicine SF600-1100 Kasarda Radovan Moravčíková Nina Trakovická Anna Krupová Zuzana Ondrej Kadlečík Genomic variation across cervid species in respect to the estimation of red deer diversity
description	The aim of this study was to assess the genetic variations and relationships across evolutionary related cervid species in order to estimate the genetic diversity of the Red deer population that inhabits the forest area in the south-western part of Slovakia. The study was based on the application of cross-species SNP genotyping. The genomic data were obtained from a total of 86 individuals representing six genera (Axis, Dama, Cervus, Alces, Rangifer, and Odocoileus) using Illumina BovineSNP50 BeadChip. From 38.85% of successfully genotyped loci up to 1,532 SNPs showed polymorphism and were informative for subsequent analyses of the diversity and interspecific genetic relationships. Generally, a good level of observed heterozygosity was found across all species. The value of FIS (0.23±0.13) signalised the increase of a homozygous proportion within them. The application of molecular variance analysis to the hierarchical population structure showed that most of the variation was conserved within separate species (96%). The performed diversity analysis of Slovak Red deer population and comparative analysis of their phylogenic relationships among subspecies from genus Cervus did not identify a remarkable loss of genetic variability. Also, were not identified any degree of admixture that could be due to the historical background of deer farming in Slovakia or reintroduction and hybridisation by other species from genus Cervus (C. canadensis, and C. nippon) which are the major risk of loss of autochthonous Red deer populations in many areas of Central Europe. The analysis of individual’s ancestry showed consistent results with patterns of evaluated group differentiations which means low migration rates among all species.
format	article
author	Kasarda Radovan Moravčíková Nina Trakovická Anna Krupová Zuzana Ondrej Kadlečík
author_facet	Kasarda Radovan Moravčíková Nina Trakovická Anna Krupová Zuzana Ondrej Kadlečík
author_sort	Kasarda Radovan
title	Genomic variation across cervid species in respect to the estimation of red deer diversity
title_short	Genomic variation across cervid species in respect to the estimation of red deer diversity
title_full	Genomic variation across cervid species in respect to the estimation of red deer diversity
title_fullStr	Genomic variation across cervid species in respect to the estimation of red deer diversity
title_full_unstemmed	Genomic variation across cervid species in respect to the estimation of red deer diversity
title_sort	genomic variation across cervid species in respect to the estimation of red deer diversity
publisher	Sciendo
publishDate	2017
url	https://doaj.org/article/b66db4622a7e48ceb9b6fa25aa40b347
work_keys_str_mv	AT kasardaradovan genomicvariationacrosscervidspeciesinrespecttotheestimationofreddeerdiversity AT moravcikovanina genomicvariationacrosscervidspeciesinrespecttotheestimationofreddeerdiversity AT trakovickaanna genomicvariationacrosscervidspeciesinrespecttotheestimationofreddeerdiversity AT krupovazuzana genomicvariationacrosscervidspeciesinrespecttotheestimationofreddeerdiversity AT ondrejkadlecik genomicvariationacrosscervidspeciesinrespecttotheestimationofreddeerdiversity
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Genomic variation across cervid species in respect to the estimation of red deer diversity

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