Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens

ABSTRACT The implementation of whole-genome sequencing in food safety has revolutionized foodborne pathogen tracking and outbreak investigations. The vast amounts of genomic data that are being produced through ongoing surveillance efforts continue advancing our understanding of pathogen diversity a...

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Autor principal:	Jasna Kovac
Formato:	article
Lenguaje:	EN
Publicado:	American Society for Microbiology 2019
Materias:	precision food safety food supply chain genomics metagenomics microbiomes Microbiology QR1-502
Acceso en línea:	https://doaj.org/article/b759b915550a42f9b44ab717f682e83b
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spelling	oai:doaj.org-article:b759b915550a42f9b44ab717f682e83b2021-12-02T18:44:38ZPrecision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens10.1128/mSystems.00164-192379-5077https://doaj.org/article/b759b915550a42f9b44ab717f682e83b2019-06-01T00:00:00Zhttps://journals.asm.org/doi/10.1128/mSystems.00164-19https://doaj.org/toc/2379-5077ABSTRACT The implementation of whole-genome sequencing in food safety has revolutionized foodborne pathogen tracking and outbreak investigations. The vast amounts of genomic data that are being produced through ongoing surveillance efforts continue advancing our understanding of pathogen diversity and genome biology. Produced genomic data are also supporting the use of metagenomics and metatranscriptomics for detection and functional characterization of microbiological hazards in foods and food processing environments. In addition to that, many studies have shown that metabolic and pathogenic potential, antimicrobial resistance, and other phenotypes relevant to food safety can be predicted from whole-genome sequences, omitting the need for multiple laboratory tests. Nevertheless, further work in the area of functional inference is necessary to enable accurate interpretation of functional information inferred from genomic and metagenomic data, as well as real-time detection and tracking of high-risk pathogen subtypes and microbiomes.Jasna KovacAmerican Society for Microbiologyarticleprecision food safetyfood supply chaingenomicsmetagenomicsmicrobiomesMicrobiologyQR1-502ENmSystems, Vol 4, Iss 3 (2019)
institution	DOAJ
collection	DOAJ
language	EN
topic	precision food safety food supply chain genomics metagenomics microbiomes Microbiology QR1-502
spellingShingle	precision food safety food supply chain genomics metagenomics microbiomes Microbiology QR1-502 Jasna Kovac Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens
description	ABSTRACT The implementation of whole-genome sequencing in food safety has revolutionized foodborne pathogen tracking and outbreak investigations. The vast amounts of genomic data that are being produced through ongoing surveillance efforts continue advancing our understanding of pathogen diversity and genome biology. Produced genomic data are also supporting the use of metagenomics and metatranscriptomics for detection and functional characterization of microbiological hazards in foods and food processing environments. In addition to that, many studies have shown that metabolic and pathogenic potential, antimicrobial resistance, and other phenotypes relevant to food safety can be predicted from whole-genome sequences, omitting the need for multiple laboratory tests. Nevertheless, further work in the area of functional inference is necessary to enable accurate interpretation of functional information inferred from genomic and metagenomic data, as well as real-time detection and tracking of high-risk pathogen subtypes and microbiomes.
format	article
author	Jasna Kovac
author_facet	Jasna Kovac
author_sort	Jasna Kovac
title	Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens
title_short	Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens
title_full	Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens
title_fullStr	Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens
title_full_unstemmed	Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens
title_sort	precision food safety: a paradigm shift in detection and control of foodborne pathogens
publisher	American Society for Microbiology
publishDate	2019
url	https://doaj.org/article/b759b915550a42f9b44ab717f682e83b
work_keys_str_mv	AT jasnakovac precisionfoodsafetyaparadigmshiftindetectionandcontroloffoodbornepathogens
_version_	1718377701119623168

Precision Food Safety: a Paradigm Shift in Detection and Control of Foodborne Pathogens

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