Stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation

Abstract Inflammatory bowel disease (IBD) is associated with altered microbiota composition and metabolism, but it is unclear whether these changes precede inflammation or are the result of it since current studies have mainly focused on changes after the onset of disease. We previously showed diffe...

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Autores principales:	M. Glymenaki, A. Barnes, S. O’ Hagan, G. Warhurst, A. J. McBain, I. D. Wilson, D. B. Kell, K. J. Else, S. M. Cruickshank
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2017
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/ba1deb3aefe84912bdbd91350647c562
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spelling	oai:doaj.org-article:ba1deb3aefe84912bdbd91350647c5622021-12-02T12:32:34ZStability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation10.1038/s41598-017-08732-12045-2322https://doaj.org/article/ba1deb3aefe84912bdbd91350647c5622017-08-01T00:00:00Zhttps://doi.org/10.1038/s41598-017-08732-1https://doaj.org/toc/2045-2322Abstract Inflammatory bowel disease (IBD) is associated with altered microbiota composition and metabolism, but it is unclear whether these changes precede inflammation or are the result of it since current studies have mainly focused on changes after the onset of disease. We previously showed differences in mucus gut microbiota composition preceded colitis-induced inflammation and stool microbial differences only became apparent at colitis onset. In the present study, we aimed to investigate whether microbial dysbiosis was associated with differences in both predicted microbial gene content and endogenous metabolite profiles. We examined the functional potential of mucus and stool microbial communities in the mdr1a −/− mouse model of colitis and littermate controls using PICRUSt on 16S rRNA sequencing data. Our findings indicate that despite changes in microbial composition, microbial functional pathways were stable before and during the development of mucosal inflammation. LC-MS-based metabolic phenotyping (metabotyping) in urine samples confirmed that metabolite profiles in mdr1a −/− mice were remarkably unaffected by development of intestinal inflammation and there were no differences in previously published metabolic markers of IBD. Metabolic profiles did, however, discriminate the colitis-prone mdr1a −/− genotype from controls. Our results indicate resilience of the metabolic network irrespective of inflammation. Importantly as metabolites differentiated genotype, genotype-differentiating metabolites could potentially predict IBD risk.M. GlymenakiA. BarnesS. O’ HaganG. WarhurstA. J. McBainI. D. WilsonD. B. KellK. J. ElseS. M. CruickshankNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 7, Iss 1, Pp 1-10 (2017)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q M. Glymenaki A. Barnes S. O’ Hagan G. Warhurst A. J. McBain I. D. Wilson D. B. Kell K. J. Else S. M. Cruickshank Stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation
description	Abstract Inflammatory bowel disease (IBD) is associated with altered microbiota composition and metabolism, but it is unclear whether these changes precede inflammation or are the result of it since current studies have mainly focused on changes after the onset of disease. We previously showed differences in mucus gut microbiota composition preceded colitis-induced inflammation and stool microbial differences only became apparent at colitis onset. In the present study, we aimed to investigate whether microbial dysbiosis was associated with differences in both predicted microbial gene content and endogenous metabolite profiles. We examined the functional potential of mucus and stool microbial communities in the mdr1a −/− mouse model of colitis and littermate controls using PICRUSt on 16S rRNA sequencing data. Our findings indicate that despite changes in microbial composition, microbial functional pathways were stable before and during the development of mucosal inflammation. LC-MS-based metabolic phenotyping (metabotyping) in urine samples confirmed that metabolite profiles in mdr1a −/− mice were remarkably unaffected by development of intestinal inflammation and there were no differences in previously published metabolic markers of IBD. Metabolic profiles did, however, discriminate the colitis-prone mdr1a −/− genotype from controls. Our results indicate resilience of the metabolic network irrespective of inflammation. Importantly as metabolites differentiated genotype, genotype-differentiating metabolites could potentially predict IBD risk.
format	article
author	M. Glymenaki A. Barnes S. O’ Hagan G. Warhurst A. J. McBain I. D. Wilson D. B. Kell K. J. Else S. M. Cruickshank
author_facet	M. Glymenaki A. Barnes S. O’ Hagan G. Warhurst A. J. McBain I. D. Wilson D. B. Kell K. J. Else S. M. Cruickshank
author_sort	M. Glymenaki
title	Stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation
title_short	Stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation
title_full	Stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation
title_fullStr	Stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation
title_full_unstemmed	Stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation
title_sort	stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation
publisher	Nature Portfolio
publishDate	2017
url	https://doaj.org/article/ba1deb3aefe84912bdbd91350647c562
work_keys_str_mv	AT mglymenaki stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation AT abarnes stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation AT sohagan stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation AT gwarhurst stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation AT ajmcbain stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation AT idwilson stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation AT dbkell stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation AT kjelse stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation AT smcruickshank stabilityinmetabolicphenotypesandinferredmetagenomeprofilesbeforetheonsetofcolitisinducedinflammation
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Stability in metabolic phenotypes and inferred metagenome profiles before the onset of colitis-induced inflammation

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