Sampling strategies and biodiversity of influenza A subtypes in wild birds.

Wild aquatic birds are recognized as the natural reservoir of avian influenza A viruses (AIV), but across high and low pathogenic AIV strains, scientists have yet to rigorously identify most competent hosts for the various subtypes. We examined 11,870 GenBank records to provide a baseline inventory...

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Autores principales:	Sarah H Olson, Jane Parmley, Catherine Soos, Martin Gilbert, Neus Latorre-Margalef, Jeffrey S Hall, Phillip M Hansbro, Frederick Leighton, Vincent Munster, Damien Joly
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2014
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/ba4e230aa2154cd399a4d8ac379fcc7a
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id	oai:doaj.org-article:ba4e230aa2154cd399a4d8ac379fcc7a
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spelling	oai:doaj.org-article:ba4e230aa2154cd399a4d8ac379fcc7a2021-11-18T08:29:31ZSampling strategies and biodiversity of influenza A subtypes in wild birds.1932-620310.1371/journal.pone.0090826https://doaj.org/article/ba4e230aa2154cd399a4d8ac379fcc7a2014-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24599502/pdf/?tool=EBIhttps://doaj.org/toc/1932-6203Wild aquatic birds are recognized as the natural reservoir of avian influenza A viruses (AIV), but across high and low pathogenic AIV strains, scientists have yet to rigorously identify most competent hosts for the various subtypes. We examined 11,870 GenBank records to provide a baseline inventory and insight into patterns of global AIV subtype diversity and richness. Further, we conducted an extensive literature review and communicated directly with scientists to accumulate data from 50 non-overlapping studies and over 250,000 birds to assess the status of historic sampling effort. We then built virus subtype sample-based accumulation curves to better estimate sample size targets that capture a specific percentage of virus subtype richness at seven sampling locations. Our study identifies a sampling methodology that will detect an estimated 75% of circulating virus subtypes from a targeted bird population and outlines future surveillance and research priorities that are needed to explore the influence of host and virus biodiversity on emergence and transmission.Sarah H OlsonJane ParmleyCatherine SoosMartin GilbertNeus Latorre-MargalefJeffrey S HallPhillip M HansbroFrederick LeightonVincent MunsterDamien JolyPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 9, Iss 3, p e90826 (2014)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Sarah H Olson Jane Parmley Catherine Soos Martin Gilbert Neus Latorre-Margalef Jeffrey S Hall Phillip M Hansbro Frederick Leighton Vincent Munster Damien Joly Sampling strategies and biodiversity of influenza A subtypes in wild birds.
description	Wild aquatic birds are recognized as the natural reservoir of avian influenza A viruses (AIV), but across high and low pathogenic AIV strains, scientists have yet to rigorously identify most competent hosts for the various subtypes. We examined 11,870 GenBank records to provide a baseline inventory and insight into patterns of global AIV subtype diversity and richness. Further, we conducted an extensive literature review and communicated directly with scientists to accumulate data from 50 non-overlapping studies and over 250,000 birds to assess the status of historic sampling effort. We then built virus subtype sample-based accumulation curves to better estimate sample size targets that capture a specific percentage of virus subtype richness at seven sampling locations. Our study identifies a sampling methodology that will detect an estimated 75% of circulating virus subtypes from a targeted bird population and outlines future surveillance and research priorities that are needed to explore the influence of host and virus biodiversity on emergence and transmission.
format	article
author	Sarah H Olson Jane Parmley Catherine Soos Martin Gilbert Neus Latorre-Margalef Jeffrey S Hall Phillip M Hansbro Frederick Leighton Vincent Munster Damien Joly
author_facet	Sarah H Olson Jane Parmley Catherine Soos Martin Gilbert Neus Latorre-Margalef Jeffrey S Hall Phillip M Hansbro Frederick Leighton Vincent Munster Damien Joly
author_sort	Sarah H Olson
title	Sampling strategies and biodiversity of influenza A subtypes in wild birds.
title_short	Sampling strategies and biodiversity of influenza A subtypes in wild birds.
title_full	Sampling strategies and biodiversity of influenza A subtypes in wild birds.
title_fullStr	Sampling strategies and biodiversity of influenza A subtypes in wild birds.
title_full_unstemmed	Sampling strategies and biodiversity of influenza A subtypes in wild birds.
title_sort	sampling strategies and biodiversity of influenza a subtypes in wild birds.
publisher	Public Library of Science (PLoS)
publishDate	2014
url	https://doaj.org/article/ba4e230aa2154cd399a4d8ac379fcc7a
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Sampling strategies and biodiversity of influenza A subtypes in wild birds.

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