GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, whic...
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2020
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oai:doaj.org-article:bb7ec6c178e2449d9f0806ad2d30d2eb2021-12-02T17:32:43ZGenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes10.1038/s41467-020-14998-32041-1723https://doaj.org/article/bb7ec6c178e2449d9f0806ad2d30d2eb2020-03-01T00:00:00Zhttps://doi.org/10.1038/s41467-020-14998-3https://doaj.org/toc/2041-1723Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, which can estimate a genome’s ploidy.T. Rhyker Ranallo-BenavidezKamil S. JaronMichael C. SchatzNature PortfolioarticleScienceQENNature Communications, Vol 11, Iss 1, Pp 1-10 (2020) |
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Science Q T. Rhyker Ranallo-Benavidez Kamil S. Jaron Michael C. Schatz GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes |
description |
Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, which can estimate a genome’s ploidy. |
format |
article |
author |
T. Rhyker Ranallo-Benavidez Kamil S. Jaron Michael C. Schatz |
author_facet |
T. Rhyker Ranallo-Benavidez Kamil S. Jaron Michael C. Schatz |
author_sort |
T. Rhyker Ranallo-Benavidez |
title |
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes |
title_short |
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes |
title_full |
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes |
title_fullStr |
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes |
title_full_unstemmed |
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes |
title_sort |
genomescope 2.0 and smudgeplot for reference-free profiling of polyploid genomes |
publisher |
Nature Portfolio |
publishDate |
2020 |
url |
https://doaj.org/article/bb7ec6c178e2449d9f0806ad2d30d2eb |
work_keys_str_mv |
AT trhykerranallobenavidez genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes AT kamilsjaron genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes AT michaelcschatz genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes |
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1718380209818828800 |