GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, whic...

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Autores principales: T. Rhyker Ranallo-Benavidez, Kamil S. Jaron, Michael C. Schatz
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Lenguaje:EN
Publicado: Nature Portfolio 2020
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Acceso en línea:https://doaj.org/article/bb7ec6c178e2449d9f0806ad2d30d2eb
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spelling oai:doaj.org-article:bb7ec6c178e2449d9f0806ad2d30d2eb2021-12-02T17:32:43ZGenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes10.1038/s41467-020-14998-32041-1723https://doaj.org/article/bb7ec6c178e2449d9f0806ad2d30d2eb2020-03-01T00:00:00Zhttps://doi.org/10.1038/s41467-020-14998-3https://doaj.org/toc/2041-1723Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, which can estimate a genome’s ploidy.T. Rhyker Ranallo-BenavidezKamil S. JaronMichael C. SchatzNature PortfolioarticleScienceQENNature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
institution DOAJ
collection DOAJ
language EN
topic Science
Q
spellingShingle Science
Q
T. Rhyker Ranallo-Benavidez
Kamil S. Jaron
Michael C. Schatz
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
description Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, which can estimate a genome’s ploidy.
format article
author T. Rhyker Ranallo-Benavidez
Kamil S. Jaron
Michael C. Schatz
author_facet T. Rhyker Ranallo-Benavidez
Kamil S. Jaron
Michael C. Schatz
author_sort T. Rhyker Ranallo-Benavidez
title GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_short GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_full GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_fullStr GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_full_unstemmed GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_sort genomescope 2.0 and smudgeplot for reference-free profiling of polyploid genomes
publisher Nature Portfolio
publishDate 2020
url https://doaj.org/article/bb7ec6c178e2449d9f0806ad2d30d2eb
work_keys_str_mv AT trhykerranallobenavidez genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes
AT kamilsjaron genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes
AT michaelcschatz genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes
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