GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, whic...

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Main Authors:	T. Rhyker Ranallo-Benavidez, Kamil S. Jaron, Michael C. Schatz
Format:	article
Language:	EN
Published:	Nature Portfolio 2020
Subjects:	Science Q
Online Access:	https://doaj.org/article/bb7ec6c178e2449d9f0806ad2d30d2eb
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id	oai:doaj.org-article:bb7ec6c178e2449d9f0806ad2d30d2eb
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spelling	oai:doaj.org-article:bb7ec6c178e2449d9f0806ad2d30d2eb2021-12-02T17:32:43ZGenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes10.1038/s41467-020-14998-32041-1723https://doaj.org/article/bb7ec6c178e2449d9f0806ad2d30d2eb2020-03-01T00:00:00Zhttps://doi.org/10.1038/s41467-020-14998-3https://doaj.org/toc/2041-1723Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, which can estimate a genome’s ploidy.T. Rhyker Ranallo-BenavidezKamil S. JaronMichael C. SchatzNature PortfolioarticleScienceQENNature Communications, Vol 11, Iss 1, Pp 1-10 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q T. Rhyker Ranallo-Benavidez Kamil S. Jaron Michael C. Schatz GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
description	Prior to genome assembly, the raw sequencing reads must be analyzed for assessment of major genome characteristics such as genome size, heterozygosity, and repetitiveness. For this purpose, the authors introduce GenomeScope 2.0, an extension of GenomeScope for polyploid genomes, and Smudgeplot, which can estimate a genome’s ploidy.
format	article
author	T. Rhyker Ranallo-Benavidez Kamil S. Jaron Michael C. Schatz
author_facet	T. Rhyker Ranallo-Benavidez Kamil S. Jaron Michael C. Schatz
author_sort	T. Rhyker Ranallo-Benavidez
title	GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_short	GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_full	GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_fullStr	GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_full_unstemmed	GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
title_sort	genomescope 2.0 and smudgeplot for reference-free profiling of polyploid genomes
publisher	Nature Portfolio
publishDate	2020
url	https://doaj.org/article/bb7ec6c178e2449d9f0806ad2d30d2eb
work_keys_str_mv	AT trhykerranallobenavidez genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes AT kamilsjaron genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes AT michaelcschatz genomescope20andsmudgeplotforreferencefreeprofilingofpolyploidgenomes
_version_	1718380209818828800

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

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