The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging
Neuroimaging stands to benefit from emerging ultrahigh-resolution 3D histological atlases of the human brain; the first of which is ‘BigBrain’. Here, we review recent methodological advances for the integration of BigBrain with multi-modal neuroimaging and introduce a toolbox, ’BigBrainWarp’, that c...
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eLife Sciences Publications Ltd
2021
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oai:doaj.org-article:bc2bc788cd5d47e6ab1d41a2e97628b12021-11-30T11:42:56ZThe BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging10.7554/eLife.701192050-084Xe70119https://doaj.org/article/bc2bc788cd5d47e6ab1d41a2e97628b12021-08-01T00:00:00Zhttps://elifesciences.org/articles/70119https://doaj.org/toc/2050-084XNeuroimaging stands to benefit from emerging ultrahigh-resolution 3D histological atlases of the human brain; the first of which is ‘BigBrain’. Here, we review recent methodological advances for the integration of BigBrain with multi-modal neuroimaging and introduce a toolbox, ’BigBrainWarp’, that combines these developments. The aim of BigBrainWarp is to simplify workflows and support the adoption of best practices. This is accomplished with a simple wrapper function that allows users to easily map data between BigBrain and standard MRI spaces. The function automatically pulls specialised transformation procedures, based on ongoing research from a wide collaborative network of researchers. Additionally, the toolbox improves accessibility of histological information through dissemination of ready-to-use cytoarchitectural features. Finally, we demonstrate the utility of BigBrainWarp with three tutorials and discuss the potential of the toolbox to support multi-scale investigations of brain organisation.Casey PaquolaJessica RoyerLindsay B LewisClaude LepageTristan GlatardKonrad WagstylJordan DeKrakerPaule-J ToussaintSofie L ValkLouis CollinsAli R KhanKatrin AmuntsAlan C EvansTimo DickscheidBoris BernhardteLife Sciences Publications Ltdarticleneuroimaginghistologymulti-modalanatomyMedicineRScienceQBiology (General)QH301-705.5ENeLife, Vol 10 (2021) |
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| topic |
neuroimaging histology multi-modal anatomy Medicine R Science Q Biology (General) QH301-705.5 |
| spellingShingle |
neuroimaging histology multi-modal anatomy Medicine R Science Q Biology (General) QH301-705.5 Casey Paquola Jessica Royer Lindsay B Lewis Claude Lepage Tristan Glatard Konrad Wagstyl Jordan DeKraker Paule-J Toussaint Sofie L Valk Louis Collins Ali R Khan Katrin Amunts Alan C Evans Timo Dickscheid Boris Bernhardt The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging |
| description |
Neuroimaging stands to benefit from emerging ultrahigh-resolution 3D histological atlases of the human brain; the first of which is ‘BigBrain’. Here, we review recent methodological advances for the integration of BigBrain with multi-modal neuroimaging and introduce a toolbox, ’BigBrainWarp’, that combines these developments. The aim of BigBrainWarp is to simplify workflows and support the adoption of best practices. This is accomplished with a simple wrapper function that allows users to easily map data between BigBrain and standard MRI spaces. The function automatically pulls specialised transformation procedures, based on ongoing research from a wide collaborative network of researchers. Additionally, the toolbox improves accessibility of histological information through dissemination of ready-to-use cytoarchitectural features. Finally, we demonstrate the utility of BigBrainWarp with three tutorials and discuss the potential of the toolbox to support multi-scale investigations of brain organisation. |
| format |
article |
| author |
Casey Paquola Jessica Royer Lindsay B Lewis Claude Lepage Tristan Glatard Konrad Wagstyl Jordan DeKraker Paule-J Toussaint Sofie L Valk Louis Collins Ali R Khan Katrin Amunts Alan C Evans Timo Dickscheid Boris Bernhardt |
| author_facet |
Casey Paquola Jessica Royer Lindsay B Lewis Claude Lepage Tristan Glatard Konrad Wagstyl Jordan DeKraker Paule-J Toussaint Sofie L Valk Louis Collins Ali R Khan Katrin Amunts Alan C Evans Timo Dickscheid Boris Bernhardt |
| author_sort |
Casey Paquola |
| title |
The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging |
| title_short |
The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging |
| title_full |
The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging |
| title_fullStr |
The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging |
| title_full_unstemmed |
The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging |
| title_sort |
bigbrainwarp toolbox for integration of bigbrain 3d histology with multimodal neuroimaging |
| publisher |
eLife Sciences Publications Ltd |
| publishDate |
2021 |
| url |
https://doaj.org/article/bc2bc788cd5d47e6ab1d41a2e97628b1 |
| work_keys_str_mv |
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