Deep learning-enabled multi-organ segmentation in whole-body mouse scans

Organ segmentation of whole-body mouse images is essential for quantitative analysis, but is tedious and error-prone. Here the authors develop a deep learning pipeline to segment major organs and the skeleton in volumetric whole-body scans in less than a second, and present probability maps and unce...

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Autores principales:	Oliver Schoppe, Chenchen Pan, Javier Coronel, Hongcheng Mai, Zhouyi Rong, Mihail Ivilinov Todorov, Annemarie Müskes, Fernando Navarro, Hongwei Li, Ali Ertürk, Bjoern H. Menze
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2020
Materias:	Science Q
Acceso en línea:	https://doaj.org/article/beaa83df319f4b3a87f854ede0507b79
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id	oai:doaj.org-article:beaa83df319f4b3a87f854ede0507b79
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spelling	oai:doaj.org-article:beaa83df319f4b3a87f854ede0507b792021-12-02T14:40:27ZDeep learning-enabled multi-organ segmentation in whole-body mouse scans10.1038/s41467-020-19449-72041-1723https://doaj.org/article/beaa83df319f4b3a87f854ede0507b792020-11-01T00:00:00Zhttps://doi.org/10.1038/s41467-020-19449-7https://doaj.org/toc/2041-1723Organ segmentation of whole-body mouse images is essential for quantitative analysis, but is tedious and error-prone. Here the authors develop a deep learning pipeline to segment major organs and the skeleton in volumetric whole-body scans in less than a second, and present probability maps and uncertainty estimates.Oliver SchoppeChenchen PanJavier CoronelHongcheng MaiZhouyi RongMihail Ivilinov TodorovAnnemarie MüskesFernando NavarroHongwei LiAli ErtürkBjoern H. MenzeNature PortfolioarticleScienceQENNature Communications, Vol 11, Iss 1, Pp 1-14 (2020)
institution	DOAJ
collection	DOAJ
language	EN
topic	Science Q
spellingShingle	Science Q Oliver Schoppe Chenchen Pan Javier Coronel Hongcheng Mai Zhouyi Rong Mihail Ivilinov Todorov Annemarie Müskes Fernando Navarro Hongwei Li Ali Ertürk Bjoern H. Menze Deep learning-enabled multi-organ segmentation in whole-body mouse scans
description	Organ segmentation of whole-body mouse images is essential for quantitative analysis, but is tedious and error-prone. Here the authors develop a deep learning pipeline to segment major organs and the skeleton in volumetric whole-body scans in less than a second, and present probability maps and uncertainty estimates.
format	article
author	Oliver Schoppe Chenchen Pan Javier Coronel Hongcheng Mai Zhouyi Rong Mihail Ivilinov Todorov Annemarie Müskes Fernando Navarro Hongwei Li Ali Ertürk Bjoern H. Menze
author_facet	Oliver Schoppe Chenchen Pan Javier Coronel Hongcheng Mai Zhouyi Rong Mihail Ivilinov Todorov Annemarie Müskes Fernando Navarro Hongwei Li Ali Ertürk Bjoern H. Menze
author_sort	Oliver Schoppe
title	Deep learning-enabled multi-organ segmentation in whole-body mouse scans
title_short	Deep learning-enabled multi-organ segmentation in whole-body mouse scans
title_full	Deep learning-enabled multi-organ segmentation in whole-body mouse scans
title_fullStr	Deep learning-enabled multi-organ segmentation in whole-body mouse scans
title_full_unstemmed	Deep learning-enabled multi-organ segmentation in whole-body mouse scans
title_sort	deep learning-enabled multi-organ segmentation in whole-body mouse scans
publisher	Nature Portfolio
publishDate	2020
url	https://doaj.org/article/beaa83df319f4b3a87f854ede0507b79
work_keys_str_mv	AT oliverschoppe deeplearningenabledmultiorgansegmentationinwholebodymousescans AT chenchenpan deeplearningenabledmultiorgansegmentationinwholebodymousescans AT javiercoronel deeplearningenabledmultiorgansegmentationinwholebodymousescans AT hongchengmai deeplearningenabledmultiorgansegmentationinwholebodymousescans AT zhouyirong deeplearningenabledmultiorgansegmentationinwholebodymousescans AT mihailivilinovtodorov deeplearningenabledmultiorgansegmentationinwholebodymousescans AT annemariemuskes deeplearningenabledmultiorgansegmentationinwholebodymousescans AT fernandonavarro deeplearningenabledmultiorgansegmentationinwholebodymousescans AT hongweili deeplearningenabledmultiorgansegmentationinwholebodymousescans AT alierturk deeplearningenabledmultiorgansegmentationinwholebodymousescans AT bjoernhmenze deeplearningenabledmultiorgansegmentationinwholebodymousescans
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Deep learning-enabled multi-organ segmentation in whole-body mouse scans

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