Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea

Abstract Based upon the morphological characteristics, tea is classified botanically into 2 main types i.e. Assam and China, which are morphologically very distinct. Further, they are so easily pollinated among themselves, that a third category, Cambod type is also described. Although the general co...

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Autores principales:	Hukam C. Rawal, Sangeeta Borchetia, Biswajit Bera, S. Soundararajan, R. Victor J. Ilango, Anoop Kumar Barooah, Tilak Raj Sharma, Nagendra Kumar Singh, Tapan Kumar Mondal
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/bebd2310fe814945b9dc970f75cb8c42
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spelling	oai:doaj.org-article:bebd2310fe814945b9dc970f75cb8c422021-12-02T15:12:55ZComparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea10.1038/s41598-020-80431-w2045-2322https://doaj.org/article/bebd2310fe814945b9dc970f75cb8c422021-01-01T00:00:00Zhttps://doi.org/10.1038/s41598-020-80431-whttps://doaj.org/toc/2045-2322Abstract Based upon the morphological characteristics, tea is classified botanically into 2 main types i.e. Assam and China, which are morphologically very distinct. Further, they are so easily pollinated among themselves, that a third category, Cambod type is also described. Although the general consensus of origin of tea is India, Burma and China adjoining area, yet specific origin of China and Assam type tea are not yet clear. Thus, we made an attempt to understand the origin of Indian tea through the comparative analysis of different chloroplast (cp) genomes under the Camellia genus by performing evolutionary study and comparing simple sequence repeats (SSRs) and codon usage distribution patterns among them. The Cp genome based phylogenetic analysis indicated that Indian Tea, TV1 formed a different group from that of China tea, indicating that TV1 might have undergone different domestications and hence owe different origins. The simple sequence repeats (SSRs) analysis and codon usage distribution patterns also supported the clustering order in the cp genome based phylogenetic tree.Hukam C. RawalSangeeta BorchetiaBiswajit BeraS. SoundararajanR. Victor J. IlangoAnoop Kumar BarooahTilak Raj SharmaNagendra Kumar SinghTapan Kumar MondalNature PortfolioarticleMedicineRScienceQENScientific Reports, Vol 11, Iss 1, Pp 1-6 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Hukam C. Rawal Sangeeta Borchetia Biswajit Bera S. Soundararajan R. Victor J. Ilango Anoop Kumar Barooah Tilak Raj Sharma Nagendra Kumar Singh Tapan Kumar Mondal Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea
description	Abstract Based upon the morphological characteristics, tea is classified botanically into 2 main types i.e. Assam and China, which are morphologically very distinct. Further, they are so easily pollinated among themselves, that a third category, Cambod type is also described. Although the general consensus of origin of tea is India, Burma and China adjoining area, yet specific origin of China and Assam type tea are not yet clear. Thus, we made an attempt to understand the origin of Indian tea through the comparative analysis of different chloroplast (cp) genomes under the Camellia genus by performing evolutionary study and comparing simple sequence repeats (SSRs) and codon usage distribution patterns among them. The Cp genome based phylogenetic analysis indicated that Indian Tea, TV1 formed a different group from that of China tea, indicating that TV1 might have undergone different domestications and hence owe different origins. The simple sequence repeats (SSRs) analysis and codon usage distribution patterns also supported the clustering order in the cp genome based phylogenetic tree.
format	article
author	Hukam C. Rawal Sangeeta Borchetia Biswajit Bera S. Soundararajan R. Victor J. Ilango Anoop Kumar Barooah Tilak Raj Sharma Nagendra Kumar Singh Tapan Kumar Mondal
author_facet	Hukam C. Rawal Sangeeta Borchetia Biswajit Bera S. Soundararajan R. Victor J. Ilango Anoop Kumar Barooah Tilak Raj Sharma Nagendra Kumar Singh Tapan Kumar Mondal
author_sort	Hukam C. Rawal
title	Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea
title_short	Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea
title_full	Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea
title_fullStr	Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea
title_full_unstemmed	Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea
title_sort	comparative analysis of chloroplast genomes indicated different origin for indian tea (camellia assamica cv tv1) as compared to chinese tea
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/bebd2310fe814945b9dc970f75cb8c42
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Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea

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