HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.

The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibility to rapidly investigate their HTS data using a...

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Autores principales:	Fabrice P A David, Julien Delafontaine, Solenne Carat, Frederick J Ross, Gregory Lefebvre, Yohan Jarosz, Lucas Sinclair, Daan Noordermeer, Jacques Rougemont, Marion Leleu
Formato:	article
Lenguaje:	EN
Publicado:	Public Library of Science (PLoS) 2014
Materias:	Medicine R Science Q
Acceso en línea:	https://doaj.org/article/cd966563ea37422396601dabde242249
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spelling	oai:doaj.org-article:cd966563ea37422396601dabde2422492021-11-18T08:35:46ZHTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.1932-620310.1371/journal.pone.0085879https://doaj.org/article/cd966563ea37422396601dabde2422492014-01-01T00:00:00Zhttps://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24475057/pdf/?tool=EBIhttps://doaj.org/toc/1932-6203The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibility to rapidly investigate their HTS data using an intuitive web application with heuristically pre-defined parameters. A number of open-source software components have been implemented and can be used to build, configure and run HTS analysis pipelines reactively. Besides, our programming framework empowers developers with the possibility to design their own workflows and integrate additional third-party software. The HTSstation web application is accessible at http://htsstation.epfl.ch.Fabrice P A DavidJulien DelafontaineSolenne CaratFrederick J RossGregory LefebvreYohan JaroszLucas SinclairDaan NoordermeerJacques RougemontMarion LeleuPublic Library of Science (PLoS)articleMedicineRScienceQENPLoS ONE, Vol 9, Iss 1, p e85879 (2014)
institution	DOAJ
collection	DOAJ
language	EN
topic	Medicine R Science Q
spellingShingle	Medicine R Science Q Fabrice P A David Julien Delafontaine Solenne Carat Frederick J Ross Gregory Lefebvre Yohan Jarosz Lucas Sinclair Daan Noordermeer Jacques Rougemont Marion Leleu HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
description	The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibility to rapidly investigate their HTS data using an intuitive web application with heuristically pre-defined parameters. A number of open-source software components have been implemented and can be used to build, configure and run HTS analysis pipelines reactively. Besides, our programming framework empowers developers with the possibility to design their own workflows and integrate additional third-party software. The HTSstation web application is accessible at http://htsstation.epfl.ch.
format	article
author	Fabrice P A David Julien Delafontaine Solenne Carat Frederick J Ross Gregory Lefebvre Yohan Jarosz Lucas Sinclair Daan Noordermeer Jacques Rougemont Marion Leleu
author_facet	Fabrice P A David Julien Delafontaine Solenne Carat Frederick J Ross Gregory Lefebvre Yohan Jarosz Lucas Sinclair Daan Noordermeer Jacques Rougemont Marion Leleu
author_sort	Fabrice P A David
title	HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
title_short	HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
title_full	HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
title_fullStr	HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
title_full_unstemmed	HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
title_sort	htsstation: a web application and open-access libraries for high-throughput sequencing data analysis.
publisher	Public Library of Science (PLoS)
publishDate	2014
url	https://doaj.org/article/cd966563ea37422396601dabde242249
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HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.

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