DeepACSON automated segmentation of white matter in 3D electron microscopy

With DeepACSON, Abdollahzadeh et al. combines existing deep learning-based methods for semantic segmentation and a novel shape decomposition technique for the instance segmentation. The pipeline is used to segment low-resolution 3D-EM datasets allowing quantification of white matter morphology in la...

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Autores principales:	Ali Abdollahzadeh, Ilya Belevich, Eija Jokitalo, Alejandra Sierra, Jussi Tohka
Formato:	article
Lenguaje:	EN
Publicado:	Nature Portfolio 2021
Materias:	Biology (General) QH301-705.5
Acceso en línea:	https://doaj.org/article/ceef10eba1c14eabaaaea963abe3d645
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spelling	oai:doaj.org-article:ceef10eba1c14eabaaaea963abe3d6452021-12-02T12:09:18ZDeepACSON automated segmentation of white matter in 3D electron microscopy10.1038/s42003-021-01699-w2399-3642https://doaj.org/article/ceef10eba1c14eabaaaea963abe3d6452021-02-01T00:00:00Zhttps://doi.org/10.1038/s42003-021-01699-whttps://doaj.org/toc/2399-3642With DeepACSON, Abdollahzadeh et al. combines existing deep learning-based methods for semantic segmentation and a novel shape decomposition technique for the instance segmentation. The pipeline is used to segment low-resolution 3D-EM datasets allowing quantification of white matter morphology in large fields-of-view.Ali AbdollahzadehIlya BelevichEija JokitaloAlejandra SierraJussi TohkaNature PortfolioarticleBiology (General)QH301-705.5ENCommunications Biology, Vol 4, Iss 1, Pp 1-14 (2021)
institution	DOAJ
collection	DOAJ
language	EN
topic	Biology (General) QH301-705.5
spellingShingle	Biology (General) QH301-705.5 Ali Abdollahzadeh Ilya Belevich Eija Jokitalo Alejandra Sierra Jussi Tohka DeepACSON automated segmentation of white matter in 3D electron microscopy
description	With DeepACSON, Abdollahzadeh et al. combines existing deep learning-based methods for semantic segmentation and a novel shape decomposition technique for the instance segmentation. The pipeline is used to segment low-resolution 3D-EM datasets allowing quantification of white matter morphology in large fields-of-view.
format	article
author	Ali Abdollahzadeh Ilya Belevich Eija Jokitalo Alejandra Sierra Jussi Tohka
author_facet	Ali Abdollahzadeh Ilya Belevich Eija Jokitalo Alejandra Sierra Jussi Tohka
author_sort	Ali Abdollahzadeh
title	DeepACSON automated segmentation of white matter in 3D electron microscopy
title_short	DeepACSON automated segmentation of white matter in 3D electron microscopy
title_full	DeepACSON automated segmentation of white matter in 3D electron microscopy
title_fullStr	DeepACSON automated segmentation of white matter in 3D electron microscopy
title_full_unstemmed	DeepACSON automated segmentation of white matter in 3D electron microscopy
title_sort	deepacson automated segmentation of white matter in 3d electron microscopy
publisher	Nature Portfolio
publishDate	2021
url	https://doaj.org/article/ceef10eba1c14eabaaaea963abe3d645
work_keys_str_mv	AT aliabdollahzadeh deepacsonautomatedsegmentationofwhitematterin3delectronmicroscopy AT ilyabelevich deepacsonautomatedsegmentationofwhitematterin3delectronmicroscopy AT eijajokitalo deepacsonautomatedsegmentationofwhitematterin3delectronmicroscopy AT alejandrasierra deepacsonautomatedsegmentationofwhitematterin3delectronmicroscopy AT jussitohka deepacsonautomatedsegmentationofwhitematterin3delectronmicroscopy
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DeepACSON automated segmentation of white matter in 3D electron microscopy

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